add r-expressionatlas

2 files changed, 60 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..fb869a12bbda
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,22 @@
+pkgbase = r-expressionatlas
+	pkgdesc = Download datasets from EMBL-EBI Expression Atlas
+	pkgver = 1.24.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ExpressionAtlas
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biobase
+	depends = r-httr
+	depends = r-limma
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-xml
+	depends = r-xml2
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ExpressionAtlas_1.24.0.tar.gz
+	sha256sums = bd2a3bb2bd956613116112f0f6aa4ec4d995ec090876b4f10720374b5b973055
+
+pkgname = r-expressionatlas
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ffd8163932a6
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,38 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ExpressionAtlas
+_pkgver=1.24.0
+pkgname=r-${_pkgname,,}
+pkgver=1.24.0
+pkgrel=1
+pkgdesc='Download datasets from EMBL-EBI Expression Atlas'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-httr
+  r-limma
+  r-s4vectors
+  r-summarizedexperiment
+  r-xml
+  r-xml2
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('bd2a3bb2bd956613116112f0f6aa4ec4d995ec090876b4f10720374b5b973055')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: