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| author | Pekka Ristola | 2023-11-30 18:07:54 +0200 |
|---|---|---|
| committer | Pekka Ristola | 2023-11-30 18:07:54 +0200 |
| commit | bc4dce7a25f8e80166baa7d1a0e0990a1bb7b24b (patch) | |
| tree | 8438ec31e33425e5dcedc6b10dc971ab0322baf8 | |
| download | aur-bc4dce7a25f8e80166baa7d1a0e0990a1bb7b24b.tar.gz | |
Version 1.4.0
| -rw-r--r-- | .SRCINFO | 52 | ||||
| -rw-r--r-- | PKGBUILD | 75 |
2 files changed, 127 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..79fec4e19510 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,52 @@ +pkgbase = r-factr + pkgdesc = Functional Annotation of Custom Transcriptomes + pkgver = 1.4.0 + pkgrel = 1 + url = https://bioconductor.org/packages/factR + arch = any + license = Apache + checkdepends = r-annotationhub + checkdepends = r-bsgenome.mmusculus.ucsc.mm10 + checkdepends = r-testthat + depends = r-biocgenerics + depends = r-biocparallel + depends = r-biostrings + depends = r-crayon + depends = r-data.table + depends = r-dplyr + depends = r-drawproteins + depends = r-genomeinfodb + depends = r-genomicfeatures + depends = r-genomicranges + depends = r-ggplot2 + depends = r-iranges + depends = r-pbapply + depends = r-purrr + depends = r-rcurl + depends = r-rlang + depends = r-rtracklayer + depends = r-s4vectors + depends = r-stringr + depends = r-tibble + depends = r-tidyr + depends = r-wiggleplotr + depends = r-xml + optdepends = r-annotationhub + optdepends = r-bio3d + optdepends = r-bsgenome + optdepends = r-bsgenome.mmusculus.ucsc.mm10 + optdepends = r-covr + optdepends = r-knitr + optdepends = r-markdown + optdepends = r-patchwork + optdepends = r-rmarkdown + optdepends = r-rmdformats + optdepends = r-signalhsmm + optdepends = r-testthat + optdepends = r-tidyverse + optdepends = r-zeallot + source = https://bioconductor.org/packages/release/bioc/src/contrib/factR_1.4.0.tar.gz + md5sums = 55b088d84e382a7068b40062151e4bec + sha256sums = bb37f5dfd3ff46d37ff4ae979b5cb6753d953372522fac7e740f3869313e99e4 + +pkgname = r-factr diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..308ded99586b --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,75 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=factR +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Functional Annotation of Custom Transcriptomes" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(Apache) +depends=( + r-biocgenerics + r-biocparallel + r-biostrings + r-crayon + r-data.table + r-dplyr + r-drawproteins + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-ggplot2 + r-iranges + r-pbapply + r-purrr + r-rcurl + r-rlang + r-rtracklayer + r-s4vectors + r-stringr + r-tibble + r-tidyr + r-wiggleplotr + r-xml +) +checkdepends=( + r-annotationhub + r-bsgenome.mmusculus.ucsc.mm10 + r-testthat +) +optdepends=( + r-annotationhub + r-bio3d + r-bsgenome + r-bsgenome.mmusculus.ucsc.mm10 + r-covr + r-knitr + r-markdown + r-patchwork + r-rmarkdown + r-rmdformats + r-signalhsmm + r-testthat + r-tidyverse + r-zeallot +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('55b088d84e382a7068b40062151e4bec') +sha256sums=('bb37f5dfd3ff46d37ff4ae979b5cb6753d953372522fac7e740f3869313e99e4') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |