Version 1.6.0

2 files changed, 75 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..6aa34f556631
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,26 @@
+pkgbase = r-fastreer
+	pkgdesc = Phylogenetic, Distance and Other Calculations on VCF and Fasta Files
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/fastreeR
+	arch = any
+	license = GPL-3.0-only
+	checkdepends = r-testthat
+	depends = r-ape
+	depends = r-data.table
+	depends = r-dynamictreecut
+	depends = r-r.utils
+	depends = r-rjava
+	depends = r-stringr
+	optdepends = r-biocfilecache
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-memuse
+	optdepends = r-rmarkdown
+	optdepends = r-spelling
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/fastreeR_1.6.0.tar.gz
+	md5sums = e2b7164aeaa305f819536d9b85e4de12
+	b2sums = 773d006ed3f7ead8f6a95c179c28cc776c64a2ce07b7eb1fa8083deac2a480e3c9eb21e4942582b35bb41520401ff8a463ae64fe820aaa9aa680139a80ce27f1
+
+pkgname = r-fastreer
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e5873f4d152e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=fastreeR
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Phylogenetic, Distance and Other Calculations on VCF and Fasta Files"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('GPL-3.0-only')
+depends=(
+  r-ape
+  r-data.table
+  r-dynamictreecut
+  r-r.utils
+  r-rjava
+  r-stringr
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocfilecache
+  r-biocstyle
+  r-knitr
+  r-memuse
+  r-rmarkdown
+  r-spelling
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('e2b7164aeaa305f819536d9b85e4de12')
+b2sums=('773d006ed3f7ead8f6a95c179c28cc776c64a2ce07b7eb1fa8083deac2a480e3c9eb21e4942582b35bb41520401ff8a463ae64fe820aaa9aa680139a80ce27f1')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}