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authorSukanka2022-06-06 09:36:15 +0800
committerSukanka2022-06-06 09:36:15 +0800
commitaab0597de75bf6118108da1c59d30e15ce84037a (patch)
treeba23a807aa724833a7315eb6621ae42c3a0261e7
downloadaur-aab0597de75bf6118108da1c59d30e15ce84037a.tar.gz
add r-fedup
-rw-r--r--.SRCINFO28
-rw-r--r--PKGBUILD45
2 files changed, 73 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 00000000000..a2fb9e589c8
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-fedup
+ pkgdesc = Fisher's Test for Enrichment and Depletion of User-Defined Pathways
+ pkgver = 1.4.0
+ pkgrel = 1
+ url = https://bioconductor.org/packages/fedup
+ arch = any
+ license = MIT
+ depends = r
+ depends = r-data.table
+ depends = r-dplyr
+ depends = r-forcats
+ depends = r-ggplot2
+ depends = r-ggthemes
+ depends = r-openxlsx
+ depends = r-rcolorbrewer
+ depends = r-rcy3
+ depends = r-tibble
+ optdepends = r-biomart
+ optdepends = r-covr
+ optdepends = r-devtools
+ optdepends = r-knitr
+ optdepends = r-rmarkdown
+ optdepends = r-testthat
+ optdepends = r-tidyr
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/fedup_1.4.0.tar.gz
+ sha256sums = 383a9105aac3175e97027c3f0967b1fc1569d6ed9fea432aa221d2ff93abc9e1
+
+pkgname = r-fedup
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 00000000000..5694ea1c2d9
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=fedup
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc="Fisher's Test for Enrichment and Depletion of User-Defined Pathways"
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+ r
+ r-data.table
+ r-dplyr
+ r-forcats
+ r-ggplot2
+ r-ggthemes
+ r-openxlsx
+ r-rcolorbrewer
+ r-rcy3
+ r-tibble
+)
+optdepends=(
+ r-biomart
+ r-covr
+ r-devtools
+ r-knitr
+ r-rmarkdown
+ r-testthat
+ r-tidyr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('383a9105aac3175e97027c3f0967b1fc1569d6ed9fea432aa221d2ff93abc9e1')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+ install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: