add r-fgsea

2 files changed, 76 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..34774bdb3546
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,29 @@
+pkgbase = r-fgsea
+	pkgdesc = Fast Gene Set Enrichment Analysis
+	pkgver = 1.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/fgsea
+	arch = x86_64
+	license = MIT
+	depends = r
+	depends = r-bh
+	depends = r-biocparallel
+	depends = r-data.table
+	depends = r-fastmatch
+	depends = r-ggplot2
+	depends = r-gridextra
+	depends = r-rcpp
+	depends = gcc
+	optdepends = r-annotationdbi
+	optdepends = r-geoquery
+	optdepends = r-knitr
+	optdepends = r-limma
+	optdepends = r-org.mm.eg.db
+	optdepends = r-parallel
+	optdepends = r-reactome.db
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/fgsea_1.22.0.tar.gz
+	sha256sums = ef56433dfff96c1ab20737d6af954c1c6f5158fb74654ce875849aa8def3d646
+
+pkgname = r-fgsea
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..740c70302a9e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,47 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=fgsea
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='Fast Gene Set Enrichment Analysis'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-bh
+  r-biocparallel
+  r-data.table
+  r-fastmatch
+  r-ggplot2
+  r-gridextra
+  r-rcpp
+  gcc
+)
+optdepends=(
+  r-annotationdbi
+  r-geoquery
+  r-knitr
+  r-limma
+  r-org.mm.eg.db
+  r-parallel
+  r-reactome.db
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('ef56433dfff96c1ab20737d6af954c1c6f5158fb74654ce875849aa8def3d646')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENCE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: