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| author | Sukanka | 2022-06-06 09:46:26 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 09:46:26 +0800 |
| commit | bb942617be8a964a2d4dd7c693386c05bf6e8604 (patch) | |
| tree | 6bff2702baefd6368e568a33029507910173633a | |
| download | aur-bb942617be8a964a2d4dd7c693386c05bf6e8604.tar.gz | |
add r-flames
| -rw-r--r-- | .SRCINFO | 41 | ||||
| -rw-r--r-- | PKGBUILD | 58 |
2 files changed, 99 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..e2e2871f70b8 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,41 @@ +pkgbase = r-flames + pkgdesc = FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data + pkgver = 1.2.1 + pkgrel = 3 + url = https://bioconductor.org/packages/FLAMES + arch = x86_64 + license = GPL + depends = r + depends = r-basilisk + depends = r-dplyr + depends = r-magrittr + depends = r-rcpp + depends = r-reticulate + depends = r-rhtslib + depends = r-rsamtools + depends = r-s4vectors + depends = r-scater + depends = r-scuttle + depends = r-singlecellexperiment + depends = r-summarizedexperiment + depends = r-tidyr + depends = r-zlibbioc + depends = r-complexheatmap + depends = r-rtracklayer + depends = r-igraph + depends = r-ggbio + depends = r-scran + depends = r-genomicfeatures + depends = r-circlize + depends = r-cowplot + depends = r-stringr + depends = r-bambu + optdepends = r-biocfilecache + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-markdown + optdepends = r-rmarkdown + source = https://bioconductor.org/packages/release/bioc/src/contrib/FLAMES_1.2.1.tar.gz + sha256sums = ad368abf06bcdc31598822bcaf4d6f84efd27ec2d57320a5a91d5c7f27c4d277 + +pkgname = r-flames diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..680ffeb897e8 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,58 @@ +# system requirements: GNU make, C++11 +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=FLAMES +_pkgver=1.2.1 +pkgname=r-${_pkgname,,} +pkgver=1.2.1 +pkgrel=3 +pkgdesc='FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-basilisk + r-dplyr + r-magrittr + r-rcpp + r-reticulate + r-rhtslib + r-rsamtools + r-s4vectors + r-scater + r-scuttle + r-singlecellexperiment + r-summarizedexperiment + r-tidyr + r-zlibbioc + r-complexheatmap + r-rtracklayer + r-igraph + r-ggbio + r-scran + r-genomicfeatures + r-circlize + r-cowplot + r-stringr + r-bambu +) +optdepends=( + r-biocfilecache + r-biocstyle + r-knitr + r-markdown + r-rmarkdown +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('ad368abf06bcdc31598822bcaf4d6f84efd27ec2d57320a5a91d5c7f27c4d277') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |