add r-flowcore

2 files changed, 86 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..0d392b310c7c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-flowcore
+	pkgdesc = flowCore: Basic structures for flow cytometry data
+	pkgver = 2.8.0
+	pkgrel = 3
+	url = https://bioconductor.org/packages/flowCore
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-bh
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-cytolib
+	depends = r-matrixstats
+	depends = r-rcpp
+	depends = r-rcpparmadillo
+	depends = r-rprotobuflib
+	depends = r-s4vectors
+	depends = make
+	depends = gcc
+	optdepends = r-flowstats
+	optdepends = r-flowviz
+	optdepends = r-flowworkspace
+	optdepends = r-flowworkspacedata
+	optdepends = r-ggcyto
+	optdepends = r-gridextra
+	optdepends = r-knitr
+	optdepends = r-opencyto
+	optdepends = r-rgraphviz
+	optdepends = r-testthat
+	options = !lto
+	options = !buildflags
+	options = staticlibs
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/flowCore_2.8.0.tar.gz
+	sha256sums = 19ce4ffbf70bd3b5a68b045f0c4a21f85c0586ff0817be22d01b44c2b289cc9e
+
+pkgname = r-flowcore
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0f8b8e72eaef
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,50 @@
+# system requirements: GNU make, C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=flowCore
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=3
+pkgdesc='flowCore: Basic structures for flow cytometry data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-bh
+  r-biobase
+  r-biocgenerics
+  r-cytolib
+  r-matrixstats
+  r-rcpp
+  r-rcpparmadillo
+  r-rprotobuflib
+  r-s4vectors
+  make
+  gcc
+)
+optdepends=(
+  r-flowstats
+  r-flowviz
+  r-flowworkspace
+  r-flowworkspacedata
+  r-ggcyto
+  r-gridextra
+  r-knitr
+  r-opencyto
+  r-rgraphviz
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('19ce4ffbf70bd3b5a68b045f0c4a21f85c0586ff0817be22d01b44c2b289cc9e')
+options=(!lto !buildflags staticlibs)
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: