add r-flowsom

2 files changed, 88 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..77df3d5660bc
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-flowsom
+	pkgdesc = Using self-organizing maps for visualization and interpretation of cytometry data
+	pkgver = 2.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/FlowSOM
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-colorramps
+	depends = r-consensusclusterplus
+	depends = r-cytoml
+	depends = r-dplyr
+	depends = r-flowcore
+	depends = r-flowworkspace
+	depends = r-ggforce
+	depends = r-ggnewscale
+	depends = r-ggplot2
+	depends = r-ggpointdensity
+	depends = r-ggpubr
+	depends = r-ggrepel
+	depends = r-igraph
+	depends = r-magrittr
+	depends = r-pheatmap
+	depends = r-rcolorbrewer
+	depends = r-rlang
+	depends = r-rtsne
+	depends = r-scattermore
+	depends = r-tidyr
+	depends = r-xml
+	optdepends = r-biocstyle
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/FlowSOM_2.4.0.tar.gz
+	sha256sums = 8518c515dfefcf9ba970a6e99815cc2af9809b1d5bb6aa300b28d55a74d3542d
+
+pkgname = r-flowsom
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e4a73ee41b8e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=FlowSOM
+_pkgver=2.4.0
+pkgname=r-${_pkgname,,}
+pkgver=2.4.0
+pkgrel=1
+pkgdesc='Using self-organizing maps for visualization and interpretation of cytometry data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-colorramps
+  r-consensusclusterplus
+  r-cytoml
+  r-dplyr
+  r-flowcore
+  r-flowworkspace
+  r-ggforce
+  r-ggnewscale
+  r-ggplot2
+  r-ggpointdensity
+  r-ggpubr
+  r-ggrepel
+  r-igraph
+  r-magrittr
+  r-pheatmap
+  r-rcolorbrewer
+  r-rlang
+  r-rtsne
+  r-scattermore
+  r-tidyr
+  r-xml
+)
+optdepends=(
+  r-biocstyle
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('8518c515dfefcf9ba970a6e99815cc2af9809b1d5bb6aa300b28d55a74d3542d')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: