add r-funchip

2 files changed, 58 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7f7b07d5a1be
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,22 @@
+pkgbase = r-funchip
+	pkgdesc = Clustering and Alignment of ChIP-Seq peaks based on their shapes
+	pkgver = 1.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/FunChIP
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-doparallel
+	depends = r-fda
+	depends = r-foreach
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-rcolorbrewer
+	depends = r-rcpp
+	depends = r-rsamtools
+	depends = r-shiny
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/FunChIP_1.22.0.tar.gz
+	sha256sums = 2dc03f76130401857678fe864c41dcbc7bd08deb14d01b6c745da2f563f786b1
+
+pkgname = r-funchip
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..16843b8b8ad6
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,36 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=FunChIP
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='Clustering and Alignment of ChIP-Seq peaks based on their shapes'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-doparallel
+  r-fda
+  r-foreach
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-rcolorbrewer
+  r-rcpp
+  r-rsamtools
+  r-shiny
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2dc03f76130401857678fe864c41dcbc7bd08deb14d01b6c745da2f563f786b1')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: