add r-gage

2 files changed, 70 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b74b09d56c48
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-gage
+	pkgdesc = Generally Applicable Gene-set Enrichment for Pathway Analysis
+	pkgver = 2.46.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/gage
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-annotationdbi
+	depends = r-go.db
+	depends = r-graph
+	depends = r-keggrest
+	optdepends = r-deseq2
+	optdepends = r-edger
+	optdepends = r-gagedata
+	optdepends = r-genomicalignments
+	optdepends = r-gseabase
+	optdepends = r-hgu133a.db
+	optdepends = r-limma
+	optdepends = r-org.hs.eg.db
+	optdepends = r-pathview
+	optdepends = r-rsamtools
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/gage_2.46.0.tar.gz
+	sha256sums = ebc09e31e6d0bc1b428e2830727322db79bcc5d3692347e55d19a304110a1d0e
+
+pkgname = r-gage
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..da4c83303176
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,43 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=gage
+_pkgver=2.46.0
+pkgname=r-${_pkgname,,}
+pkgver=2.46.0
+pkgrel=1
+pkgdesc='Generally Applicable Gene-set Enrichment for Pathway Analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-go.db
+  r-graph
+  r-keggrest
+)
+optdepends=(
+  r-deseq2
+  r-edger
+  r-gagedata
+  r-genomicalignments
+  r-gseabase
+  r-hgu133a.db
+  r-limma
+  r-org.hs.eg.db
+  r-pathview
+  r-rsamtools
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('ebc09e31e6d0bc1b428e2830727322db79bcc5d3692347e55d19a304110a1d0e')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: