add r-gcrisprtools

2 files changed, 76 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..56350297ac30
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,30 @@
+pkgbase = r-gcrisprtools
+	pkgdesc = Suite of Functions for Pooled Crispr Screen QC and Analysis
+	pkgver = 2.2.1
+	pkgrel = 3
+	url = https://bioconductor.org/packages/gCrisprTools
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biobase
+	depends = r-complexheatmap
+	depends = r-ggplot2
+	depends = r-limma
+	depends = r-rmarkdown
+	depends = r-robustrankaggreg
+	depends = r-summarizedexperiment
+	optdepends = r-annotationdbi
+	optdepends = r-biocgenerics
+	optdepends = r-edger
+	optdepends = r-fgsea
+	optdepends = r-knitr
+	optdepends = r-markdown
+	optdepends = r-msigdbr
+	optdepends = r-org.hs.eg.db
+	optdepends = r-org.mm.eg.db
+	optdepends = r-runit
+	optdepends = r-sparrow
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/gCrisprTools_2.2.1.tar.gz
+	sha256sums = 213ae328d2be47b2b198f001e32cecab623f0e3b82c79d5c01bbc392cc9809af
+
+pkgname = r-gcrisprtools
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..f053f19a9505
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,46 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=gCrisprTools
+_pkgver=2.2.1
+pkgname=r-${_pkgname,,}
+pkgver=2.2.1
+pkgrel=3
+pkgdesc='Suite of Functions for Pooled Crispr Screen QC and Analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biobase
+  r-complexheatmap
+  r-ggplot2
+  r-limma
+  r-rmarkdown
+  r-robustrankaggreg
+  r-summarizedexperiment
+)
+optdepends=(
+  r-annotationdbi
+  r-biocgenerics
+  r-edger
+  r-fgsea
+  r-knitr
+  r-markdown
+  r-msigdbr
+  r-org.hs.eg.db
+  r-org.mm.eg.db
+  r-runit
+  r-sparrow
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('213ae328d2be47b2b198f001e32cecab623f0e3b82c79d5c01bbc392cc9809af')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: