add r-gdcrnatools

2 files changed, 82 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7434187c2970
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,33 @@
+pkgbase = r-gdcrnatools
+	pkgdesc = GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
+	pkgver = 1.16.2
+	pkgrel = 3
+	url = https://bioconductor.org/packages/GDCRNATools
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biocparallel
+	depends = r-biomart
+	depends = r-clusterprofiler
+	depends = r-deseq2
+	depends = r-dose
+	depends = r-dt
+	depends = r-edger
+	depends = r-genomicdatacommons
+	depends = r-ggplot2
+	depends = r-gplots
+	depends = r-jsonlite
+	depends = r-limma
+	depends = r-org.hs.eg.db
+	depends = r-pathview
+	depends = r-rjson
+	depends = r-shiny
+	depends = r-survminer
+	depends = r-xml
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GDCRNATools_1.16.2.tar.gz
+	sha256sums = 5cfd83bf34be20b80cc02061880290c35c81c72edd03226c25423ad4c56021ff
+
+pkgname = r-gdcrnatools
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..eb024260be09
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GDCRNATools
+_pkgver=1.16.2
+pkgname=r-${_pkgname,,}
+pkgver=1.16.2
+pkgrel=3
+pkgdesc='GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biocparallel
+  r-biomart
+  r-clusterprofiler
+  r-deseq2
+  r-dose
+  r-dt
+  r-edger
+  r-genomicdatacommons
+  r-ggplot2
+  r-gplots
+  r-jsonlite
+  r-limma
+  r-org.hs.eg.db
+  r-pathview
+  r-rjson
+  r-shiny
+  r-survminer
+  r-xml
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5cfd83bf34be20b80cc02061880290c35c81c72edd03226c25423ad4c56021ff')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: