Version 1.0.0

2 files changed, 107 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..4ebc0d184f59
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,42 @@
+pkgbase = r-gdrutils
+	pkgdesc = A package with helper functions for processing drug response data
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/gDRutils
+	arch = any
+	license = Artistic2.0
+	checkdepends = r-gdrtestdata
+	checkdepends = r-qs
+	checkdepends = r-testthat
+	checkdepends = r-yaml
+	depends = r-biocparallel
+	depends = r-bumpymatrix
+	depends = r-checkmate
+	depends = r-data.table
+	depends = r-drc
+	depends = r-jsonlite
+	depends = r-jsonvalidate
+	depends = r-magrittr
+	depends = r-multiassayexperiment
+	depends = r-s4vectors
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	optdepends = r-biocmanager
+	optdepends = r-biocstyle
+	optdepends = r-futile.logger
+	optdepends = r-gdrstyle
+	optdepends = r-gdrtestdata
+	optdepends = r-iranges
+	optdepends = r-knitr
+	optdepends = r-lintr
+	optdepends = r-purrr
+	optdepends = r-qs
+	optdepends = r-rcmdcheck
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-yaml
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/gDRutils_1.0.0.tar.gz
+	md5sums = fdf71802bbd5967b163447eda2fe37ef
+	sha256sums = b06bd1bb0843ff8bc2137f207a1d07e30ebb477c8e9957acc912f689bf19f4f3
+
+pkgname = r-gdrutils
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0a8f7f147277
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,65 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=gDRutils
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="A package with helper functions for processing drug response data"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(Artistic2.0)
+depends=(
+  r-biocparallel
+  r-bumpymatrix
+  r-checkmate
+  r-data.table
+  r-drc
+  r-jsonlite
+  r-jsonvalidate
+  r-magrittr
+  r-multiassayexperiment
+  r-s4vectors
+  r-stringr
+  r-summarizedexperiment
+)
+checkdepends=(
+  r-gdrtestdata
+  r-qs
+  r-testthat
+  r-yaml
+)
+optdepends=(
+  r-biocmanager
+  r-biocstyle
+  r-futile.logger
+  r-gdrstyle
+  r-gdrtestdata
+  r-iranges
+  r-knitr
+  r-lintr
+  r-purrr
+  r-qs
+  r-rcmdcheck
+  r-rmarkdown
+  r-testthat
+  r-yaml
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('fdf71802bbd5967b163447eda2fe37ef')
+sha256sums=('b06bd1bb0843ff8bc2137f207a1d07e30ebb477c8e9957acc912f689bf19f4f3')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}