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author | BioArchLinuxBot | 2024-04-28 12:07:14 +0000 |
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committer | BioArchLinuxBot | 2024-04-28 12:07:14 +0000 |
commit | 860e1b798eedd4cfc03e363db96251aaf0fbc24d (patch) | |
tree | ae56578102818fd5732ff97d2b0f26167a1ba862 | |
parent | 17d92b915d13a43e850c5a4dd489d480d9adf587 (diff) | |
download | aur-860e1b798eedd4cfc03e363db96251aaf0fbc24d.tar.gz |
[lilac] updated to 1.84.0-2
-rw-r--r-- | .SRCINFO | 14 | ||||
-rw-r--r-- | PKGBUILD | 41 |
2 files changed, 32 insertions, 23 deletions
@@ -1,25 +1,27 @@ pkgbase = r-genefilter - pkgdesc = genefilter: methods for filtering genes from high-throughput experiments + pkgdesc = methods for filtering genes from high-throughput experiments pkgver = 1.84.0 - pkgrel = 1 + pkgrel = 2 url = https://bioconductor.org/packages/genefilter arch = x86_64 - license = Artistic2.0 + license = Artistic-2.0 makedepends = gcc-fortran - depends = r depends = r-annotate depends = r-annotationdbi depends = r-biobase depends = r-matrixgenerics optdepends = r-all optdepends = r-biocstyle - optdepends = r-class optdepends = r-hgu95av2.db optdepends = r-knitr optdepends = r-rcolorbrewer optdepends = r-roc optdepends = r-tkwidgets source = https://bioconductor.org/packages/release/bioc/src/contrib/genefilter_1.84.0.tar.gz - sha256sums = 5c629c6477b77177e423b76a8d49ffc5415df7ef7894958c97e18f260efa0061 + source = genefilter-fix-format.patch::https://github.com/Bioconductor/genefilter/pull/13.patch + md5sums = 15011d1662a58967aeb3e89f1f660e40 + md5sums = f192fbd037f307740c07f4131aecfcfb + b2sums = fb1c5d61c75424a5feba2edfcd8fee6b4f224097d9353425f9d533bd323a9e8c6a6f48b67252b6570e308966ca0fa55eeef9a992d181adefa6703eeca9983404 + b2sums = 0b0bf3818c026825f3cf007d566a32404553b4363e2671f14c3465ee3168ef71d8939811d93cd4c0d0c3158decaf5e47f63593f36afb793de183ef7713d8c230 pkgname = r-genefilter @@ -3,41 +3,48 @@ _pkgname=genefilter _pkgver=1.84.0 pkgname=r-${_pkgname,,} -pkgver=1.84.0 -pkgrel=1 -pkgdesc='genefilter: methods for filtering genes from high-throughput experiments' -arch=('x86_64') -url="https://bioconductor.org/packages/${_pkgname}" -license=('Artistic2.0') +pkgver=${_pkgver//-/.} +pkgrel=2 +pkgdesc="methods for filtering genes from high-throughput experiments" +arch=(x86_64) +url="https://bioconductor.org/packages/$_pkgname" +license=('Artistic-2.0') depends=( - r r-annotate r-annotationdbi r-biobase r-matrixgenerics ) +makedepends=( + gcc-fortran +) optdepends=( r-all r-biocstyle - r-class r-hgu95av2.db r-knitr r-rcolorbrewer r-roc r-tkwidgets ) -makedepends=( - gcc-fortran -) -source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('5c629c6477b77177e423b76a8d49ffc5415df7ef7894958c97e18f260efa0061') +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz" + "$_pkgname-fix-format.patch::https://github.com/Bioconductor/genefilter/pull/13.patch") +md5sums=('15011d1662a58967aeb3e89f1f660e40' + 'f192fbd037f307740c07f4131aecfcfb') +b2sums=('fb1c5d61c75424a5feba2edfcd8fee6b4f224097d9353425f9d533bd323a9e8c6a6f48b67252b6570e308966ca0fa55eeef9a992d181adefa6703eeca9983404' + '0b0bf3818c026825f3cf007d566a32404553b4363e2671f14c3465ee3168ef71d8939811d93cd4c0d0c3158decaf5e47f63593f36afb793de183ef7713d8c230') + +prepare() { + # fix format string errors + patch -Np1 -d "$_pkgname" < "$_pkgname-fix-format.patch" +} build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |