add r-genesis

2 files changed, 98 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b39b94bead62
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,41 @@
+pkgbase = r-genesis
+	pkgdesc = GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
+	pkgver = 2.26.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/GENESIS
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-data.table
+	depends = r-gdsfmt
+	depends = r-genomicranges
+	depends = r-gwastools
+	depends = r-igraph
+	depends = r-iranges
+	depends = r-reshape2
+	depends = r-s4vectors
+	depends = r-seqarray
+	depends = r-seqvartools
+	depends = r-snprelate
+	optdepends = r-biocstyle
+	optdepends = r-compoissonreg
+	optdepends = r-compquadform
+	optdepends = r-dplyr
+	optdepends = r-ggally
+	optdepends = r-ggplot2
+	optdepends = r-gwasdata
+	optdepends = r-knitr
+	optdepends = r-poibin
+	optdepends = r-rcolorbrewer
+	optdepends = r-rmarkdown
+	optdepends = r-spatest
+	optdepends = r-survey
+	optdepends = r-testthat
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GENESIS_2.26.0.tar.gz
+	sha256sums = 2c517d2e008cd2d4fbb5b19c7ed0e58b33b5fb3a8fa7aec108dd6f9aa4e9c3e2
+
+pkgname = r-genesis
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..32ed942d9a9e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,57 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GENESIS
+_pkgver=2.26.0
+pkgname=r-${_pkgname,,}
+pkgver=2.26.0
+pkgrel=1
+pkgdesc='GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-biocgenerics
+  r-biocparallel
+  r-data.table
+  r-gdsfmt
+  r-genomicranges
+  r-gwastools
+  r-igraph
+  r-iranges
+  r-reshape2
+  r-s4vectors
+  r-seqarray
+  r-seqvartools
+  r-snprelate
+)
+optdepends=(
+  r-biocstyle
+  r-compoissonreg
+  r-compquadform
+  r-dplyr
+  r-ggally
+  r-ggplot2
+  r-gwasdata
+  r-knitr
+  r-poibin
+  r-rcolorbrewer
+  r-rmarkdown
+  r-spatest
+  r-survey
+  r-testthat
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2c517d2e008cd2d4fbb5b19c7ed0e58b33b5fb3a8fa7aec108dd6f9aa4e9c3e2')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: