add r-genomation

2 files changed, 92 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..eba95d60d497
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,38 @@
+pkgbase = r-genomation
+	pkgdesc = Summary, annotation and visualization of genomic data
+	pkgver = 1.28.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/genomation
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-data.table
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-gridbase
+	depends = r-impute
+	depends = r-iranges
+	depends = r-matrixstats
+	depends = r-plotrix
+	depends = r-plyr
+	depends = r-rcpp
+	depends = r-readr
+	depends = r-reshape2
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-seqpattern
+	optdepends = r-biocgenerics
+	optdepends = r-genomationdata
+	optdepends = r-knitr
+	optdepends = r-rcolorbrewer
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/genomation_1.28.0.tar.gz
+	sha256sums = e9c86ed4a6d65e43bd72b3a21e645705ace47947964e41a0895c3ca2dff16a67
+
+pkgname = r-genomation
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..167b08b07b7f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=genomation
+_pkgver=1.28.0
+pkgname=r-${_pkgname,,}
+pkgver=1.28.0
+pkgrel=1
+pkgdesc='Summary, annotation and visualization of genomic data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biostrings
+  r-bsgenome
+  r-data.table
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-ggplot2
+  r-gridbase
+  r-impute
+  r-iranges
+  r-matrixstats
+  r-plotrix
+  r-plyr
+  r-rcpp
+  r-readr
+  r-reshape2
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+  r-seqpattern
+)
+optdepends=(
+  r-biocgenerics
+  r-genomationdata
+  r-knitr
+  r-rcolorbrewer
+  r-rmarkdown
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('e9c86ed4a6d65e43bd72b3a21e645705ace47947964e41a0895c3ca2dff16a67')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: