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| author | Viktor Drobot | 2020-04-28 20:44:06 +0300 |
|---|---|---|
| committer | Viktor Drobot | 2020-04-28 20:44:06 +0300 |
| commit | 8a63e85efb8e4847f17521918394d1b712d0e26e (patch) | |
| tree | 6634119af84212f690463927f385f4bdb03f38a1 | |
| parent | 1efd50d4faae34dda3ec57a91e7ecad26b6442cc (diff) | |
| download | aur-8a63e85efb8e4847f17521918394d1b712d0e26e.tar.gz | |
Update 1.23.2
| -rw-r--r-- | .SRCINFO | 14 | ||||
| -rw-r--r-- | PKGBUILD | 6 |
2 files changed, 10 insertions, 10 deletions
@@ -1,6 +1,6 @@ pkgbase = r-genomicalignments pkgdesc = Representation and manipulation of short genomic alignments - pkgver = 1.22.1 + pkgver = 1.23.2 pkgrel = 1 url = https://bioconductor.org/packages/release/bioc/html/GenomicAlignments.html arch = i686 @@ -9,12 +9,12 @@ pkgbase = r-genomicalignments makedepends = gcc depends = r>=3.5.0 depends = r-biocgenerics>=0.15.3 - depends = r-s4vectors>=0.23.19 - depends = r-iranges>=2.15.22 + depends = r-s4vectors>=0.25.14 + depends = r-iranges>=2.21.6 depends = r-genomeinfodb>=1.13.1 - depends = r-genomicranges>=1.37.2 + depends = r-genomicranges>=1.39.3 depends = r-summarizedexperiment>=1.9.13 - depends = r-biostrings>=2.47.6 + depends = r-biostrings>=2.55.7 depends = r-rsamtools>=1.31.2 depends = r-biocparallel optdepends = r-shortread @@ -31,8 +31,8 @@ pkgbase = r-genomicalignments optdepends = r-edger optdepends = r-runit optdepends = r-biocstyle - source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.22.1.tar.gz - md5sums = 6fb92061c3ffbeb89423f731f662f9d1 + source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.23.2.tar.gz + md5sums = cc8cafe4d679ee53bf7c13bbc2c1add0 pkgname = r-genomicalignments @@ -2,7 +2,7 @@ # Contributor: Grey Christoforo <first name at last name dot net> _bcname=GenomicAlignments -_bcver=1.22.1 +_bcver=1.23.2 pkgname=r-${_bcname,,} pkgver=${_bcver//[:-]/.} pkgrel=1 @@ -10,11 +10,11 @@ pkgdesc="Representation and manipulation of short genomic alignments" arch=(i686 x86_64) url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" license=(Artistic-2.0) -depends=('r>=3.5.0' 'r-biocgenerics>=0.15.3' 'r-s4vectors>=0.23.19' 'r-iranges>=2.15.22' 'r-genomeinfodb>=1.13.1' 'r-genomicranges>=1.37.2' 'r-summarizedexperiment>=1.9.13' 'r-biostrings>=2.47.6' 'r-rsamtools>=1.31.2' r-biocparallel) +depends=('r>=3.5.0' 'r-biocgenerics>=0.15.3' 'r-s4vectors>=0.25.14' 'r-iranges>=2.21.6' 'r-genomeinfodb>=1.13.1' 'r-genomicranges>=1.39.3' 'r-summarizedexperiment>=1.9.13' 'r-biostrings>=2.55.7' 'r-rsamtools>=1.31.2' r-biocparallel) makedepends=(gcc) optdepends=(r-shortread r-rtracklayer r-bsgenome r-genomicfeatures r-rnaseqdata.hnrnpc.bam.chr14 r-pasillabamsubset r-txdb.hsapiens.ucsc.hg19.knowngene r-txdb.dmelanogaster.ucsc.dm3.ensgene r-bsgenome.dmelanogaster.ucsc.dm3 r-bsgenome.hsapiens.ucsc.hg19 r-deseq2 r-edger r-runit r-biocstyle) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") -md5sums=('6fb92061c3ffbeb89423f731f662f9d1') +md5sums=('cc8cafe4d679ee53bf7c13bbc2c1add0') build() { cd "${srcdir}" |