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author | BioArchLinuxBot | 2023-09-08 00:01:50 +0000 |
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committer | BioArchLinuxBot | 2023-09-08 00:01:50 +0000 |
commit | 0516a68c9451b49d705900f4f84fa0dff14395a1 (patch) | |
tree | 0bce59b84a351380eb60e8caae2931bba195d16e | |
parent | 388ff54ea2a833c0ff14bc3e1906a6c50a90e375 (diff) | |
download | aur-0516a68c9451b49d705900f4f84fa0dff14395a1.tar.gz |
[lilac] updated to 1.24.3-1
-rw-r--r-- | .SRCINFO | 10 | ||||
-rw-r--r-- | PKGBUILD | 34 |
2 files changed, 28 insertions, 16 deletions
@@ -1,11 +1,11 @@ pkgbase = r-genomicdatacommons pkgdesc = NIH / NCI Genomic Data Commons Access - pkgver = 1.24.2 + pkgver = 1.24.3 pkgrel = 1 url = https://bioconductor.org/packages/GenomicDataCommons arch = any license = Artistic2.0 - depends = r + checkdepends = r-testthat depends = r-dplyr depends = r-genomicranges depends = r-httr @@ -16,6 +16,7 @@ pkgbase = r-genomicdatacommons depends = r-readr depends = r-rlang depends = r-tibble + depends = r-tidyr depends = r-xml2 optdepends = r-biocparallel optdepends = r-biocstyle @@ -32,7 +33,8 @@ pkgbase = r-genomicdatacommons optdepends = r-testthat optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene optdepends = r-variantannotation - source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicDataCommons_1.24.2.tar.gz - sha256sums = 747cda20f437796b0bec7400bf9b5ab58bd65f1a5970ce5bde38b0654d84fb35 + source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicDataCommons_1.24.3.tar.gz + md5sums = ad52387795de8e7bdbfb93c3835e548f + sha256sums = 6840570e4512e0d8e459ade8464349dddd158804d1233efc05f7747a54cc3bbf pkgname = r-genomicdatacommons @@ -1,16 +1,16 @@ -# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=GenomicDataCommons -_pkgver=1.24.2 +_pkgver=1.24.3 pkgname=r-${_pkgname,,} -pkgver=1.24.2 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='NIH / NCI Genomic Data Commons Access' -arch=('any') +pkgdesc="NIH / NCI Genomic Data Commons Access" +arch=(any) url="https://bioconductor.org/packages/${_pkgname}" -license=('Artistic2.0') +license=(Artistic2.0) depends=( - r r-dplyr r-genomicranges r-httr @@ -21,8 +21,12 @@ depends=( r-readr r-rlang r-tibble + r-tidyr r-xml2 ) +checkdepends=( + r-testthat +) optdepends=( r-biocparallel r-biocstyle @@ -41,14 +45,20 @@ optdepends=( r-variantannotation ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('747cda20f437796b0bec7400bf9b5ab58bd65f1a5970ce5bde38b0654d84fb35') +md5sums=('ad52387795de8e7bdbfb93c3835e548f') +sha256sums=('6840570e4512e0d8e459ade8464349dddd158804d1233efc05f7747a54cc3bbf') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |