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authorBioArchLinuxBot2023-09-08 00:01:50 +0000
committerBioArchLinuxBot2023-09-08 00:01:50 +0000
commit0516a68c9451b49d705900f4f84fa0dff14395a1 (patch)
tree0bce59b84a351380eb60e8caae2931bba195d16e
parent388ff54ea2a833c0ff14bc3e1906a6c50a90e375 (diff)
downloadaur-0516a68c9451b49d705900f4f84fa0dff14395a1.tar.gz
[lilac] updated to 1.24.3-1
-rw-r--r--.SRCINFO10
-rw-r--r--PKGBUILD34
2 files changed, 28 insertions, 16 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 97534d43fbde..a7199412e428 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,11 +1,11 @@
pkgbase = r-genomicdatacommons
pkgdesc = NIH / NCI Genomic Data Commons Access
- pkgver = 1.24.2
+ pkgver = 1.24.3
pkgrel = 1
url = https://bioconductor.org/packages/GenomicDataCommons
arch = any
license = Artistic2.0
- depends = r
+ checkdepends = r-testthat
depends = r-dplyr
depends = r-genomicranges
depends = r-httr
@@ -16,6 +16,7 @@ pkgbase = r-genomicdatacommons
depends = r-readr
depends = r-rlang
depends = r-tibble
+ depends = r-tidyr
depends = r-xml2
optdepends = r-biocparallel
optdepends = r-biocstyle
@@ -32,7 +33,8 @@ pkgbase = r-genomicdatacommons
optdepends = r-testthat
optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene
optdepends = r-variantannotation
- source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicDataCommons_1.24.2.tar.gz
- sha256sums = 747cda20f437796b0bec7400bf9b5ab58bd65f1a5970ce5bde38b0654d84fb35
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicDataCommons_1.24.3.tar.gz
+ md5sums = ad52387795de8e7bdbfb93c3835e548f
+ sha256sums = 6840570e4512e0d8e459ade8464349dddd158804d1233efc05f7747a54cc3bbf
pkgname = r-genomicdatacommons
diff --git a/PKGBUILD b/PKGBUILD
index eb873bb53ba8..4217973b1422 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,16 +1,16 @@
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=GenomicDataCommons
-_pkgver=1.24.2
+_pkgver=1.24.3
pkgname=r-${_pkgname,,}
-pkgver=1.24.2
+pkgver=${_pkgver//-/.}
pkgrel=1
-pkgdesc='NIH / NCI Genomic Data Commons Access'
-arch=('any')
+pkgdesc="NIH / NCI Genomic Data Commons Access"
+arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
-license=('Artistic2.0')
+license=(Artistic2.0)
depends=(
- r
r-dplyr
r-genomicranges
r-httr
@@ -21,8 +21,12 @@ depends=(
r-readr
r-rlang
r-tibble
+ r-tidyr
r-xml2
)
+checkdepends=(
+ r-testthat
+)
optdepends=(
r-biocparallel
r-biocstyle
@@ -41,14 +45,20 @@ optdepends=(
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('747cda20f437796b0bec7400bf9b5ab58bd65f1a5970ce5bde38b0654d84fb35')
+md5sums=('ad52387795de8e7bdbfb93c3835e548f')
+sha256sums=('6840570e4512e0d8e459ade8464349dddd158804d1233efc05f7747a54cc3bbf')
build() {
- R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+ mkdir -p build
+ R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+ cd "$_pkgname/tests"
+ R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
- install -dm0755 "${pkgdir}/usr/lib/R/library"
- cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+ install -d "$pkgdir/usr/lib/R/library"
+ cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
-# vim:set ts=2 sw=2 et: