add r-genomicfiles

2 files changed, 80 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..89d3c82f486d
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,32 @@
+pkgbase = r-genomicfiles
+	pkgdesc = Distributed computing by file or by range
+	pkgver = 1.32.1
+	pkgrel = 3
+	url = https://bioconductor.org/packages/GenomicFiles
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-matrixgenerics
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-variantannotation
+	optdepends = r-biocstyle
+	optdepends = r-biostrings
+	optdepends = r-deepsnv
+	optdepends = r-genefilter
+	optdepends = r-homo.sapiens
+	optdepends = r-rnaseqdata.hnrnpc.bam.chr14
+	optdepends = r-runit
+	optdepends = r-snpstats
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicFiles_1.32.1.tar.gz
+	sha256sums = 7fee384a18a2926acf53777ef011cbaefa65c87e975abdf7119d4e239475cc1b
+
+pkgname = r-genomicfiles
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..54e182bf34a8
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GenomicFiles
+_pkgver=1.32.1
+pkgname=r-${_pkgname,,}
+pkgver=1.32.1
+pkgrel=3
+pkgdesc='Distributed computing by file or by range'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biocgenerics
+  r-biocparallel
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-iranges
+  r-matrixgenerics
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+  r-summarizedexperiment
+  r-variantannotation
+)
+optdepends=(
+  r-biocstyle
+  r-biostrings
+  r-deepsnv
+  r-genefilter
+  r-homo.sapiens
+  r-rnaseqdata.hnrnpc.bam.chr14
+  r-runit
+  r-snpstats
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('7fee384a18a2926acf53777ef011cbaefa65c87e975abdf7119d4e239475cc1b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: