add r-genomicscores

2 files changed, 106 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f08c80632c26
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,45 @@
+pkgbase = r-genomicscores
+	pkgdesc = Infrastructure to work with genomewide position-specific scores
+	pkgver = 2.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/GenomicScores
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-annotationhub
+	depends = r-biobase
+	depends = r-biocfilecache
+	depends = r-biocgenerics
+	depends = r-biocmanager
+	depends = r-biostrings
+	depends = r-delayedarray
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-hdf5array
+	depends = r-iranges
+	depends = r-rhdf5
+	depends = r-s4vectors
+	depends = r-xml
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-data.table
+	optdepends = r-dt
+	optdepends = r-gwascat
+	optdepends = r-knitr
+	optdepends = r-mafdb.1kgenomes.phase1.hs37d5
+	optdepends = r-magrittr
+	optdepends = r-phastcons100way.ucsc.hg19
+	optdepends = r-rcolorbrewer
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	optdepends = r-shiny
+	optdepends = r-shinycustomloader
+	optdepends = r-shinydashboard
+	optdepends = r-shinyjs
+	optdepends = r-snplocs.hsapiens.dbsnp144.grch37
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-variantannotation
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicScores_2.8.0.tar.gz
+	sha256sums = 319d3548cea4d9d5dcd7aa7d479c585f5ee85c60dace9c1c098cb6840299097f
+
+pkgname = r-genomicscores
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4ff8ff092ee6
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,61 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GenomicScores
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=1
+pkgdesc='Infrastructure to work with genomewide position-specific scores'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationhub
+  r-biobase
+  r-biocfilecache
+  r-biocgenerics
+  r-biocmanager
+  r-biostrings
+  r-delayedarray
+  r-genomeinfodb
+  r-genomicranges
+  r-hdf5array
+  r-iranges
+  r-rhdf5
+  r-s4vectors
+  r-xml
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-data.table
+  r-dt
+  r-gwascat
+  r-knitr
+  r-mafdb.1kgenomes.phase1.hs37d5
+  r-magrittr
+  r-phastcons100way.ucsc.hg19
+  r-rcolorbrewer
+  r-rmarkdown
+  r-runit
+  r-shiny
+  r-shinycustomloader
+  r-shinydashboard
+  r-shinyjs
+  r-snplocs.hsapiens.dbsnp144.grch37
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-variantannotation
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('319d3548cea4d9d5dcd7aa7d479c585f5ee85c60dace9c1c098cb6840299097f')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: