add r-genomicsupersignature

2 files changed, 106 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f5824f46e189
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,45 @@
+pkgbase = r-genomicsupersignature
+	pkgdesc = Interpretation of RNA-seq experiments through robust, efficient comparison to public databases
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/GenomicSuperSignature
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biobase
+	depends = r-biocfilecache
+	depends = r-complexheatmap
+	depends = r-dplyr
+	depends = r-flextable
+	depends = r-ggplot2
+	depends = r-ggpubr
+	depends = r-plotly
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	optdepends = r-bcellviper
+	optdepends = r-biocmanager
+	optdepends = r-biocstyle
+	optdepends = r-circlize
+	optdepends = r-cluster
+	optdepends = r-clusterprofiler
+	optdepends = r-devtools
+	optdepends = r-enrichmentbrowser
+	optdepends = r-forcats
+	optdepends = r-knitr
+	optdepends = r-msigdbr
+	optdepends = r-pkgdown
+	optdepends = r-rcolorbrewer
+	optdepends = r-readr
+	optdepends = r-reshape2
+	optdepends = r-rmarkdown
+	optdepends = r-roxygen2
+	optdepends = r-stats
+	optdepends = r-testthat
+	optdepends = r-tibble
+	optdepends = r-usethis
+	optdepends = r-utils
+	optdepends = r-wordcloud
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GenomicSuperSignature_1.4.0.tar.gz
+	sha256sums = 7a0e0790de1e64cd08df9f92994ef87f928865810779be895662911de4580e26
+
+pkgname = r-genomicsupersignature
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..a8a974c95d8c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,61 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GenomicSuperSignature
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc='Interpretation of RNA-seq experiments through robust, efficient comparison to public databases'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biobase
+  r-biocfilecache
+  r-complexheatmap
+  r-dplyr
+  r-flextable
+  r-ggplot2
+  r-ggpubr
+  r-plotly
+  r-s4vectors
+  r-summarizedexperiment
+)
+optdepends=(
+  r-bcellviper
+  r-biocmanager
+  r-biocstyle
+  r-circlize
+  r-cluster
+  r-clusterprofiler
+  r-devtools
+  r-enrichmentbrowser
+  r-forcats
+  r-knitr
+  r-msigdbr
+  r-pkgdown
+  r-rcolorbrewer
+  r-readr
+  r-reshape2
+  r-rmarkdown
+  r-roxygen2
+  r-stats
+  r-testthat
+  r-tibble
+  r-usethis
+  r-utils
+  r-wordcloud
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('7a0e0790de1e64cd08df9f92994ef87f928865810779be895662911de4580e26')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: