Version 1.6.0

2 files changed, 77 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..700a64d3555e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-genproseq
+	pkgdesc = Generating Protein Sequences with Deep Generative Models
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/GenProSeq
+	arch = any
+	license = Artistic-2.0
+	checkdepends = r-testthat
+	depends = r-catencoders
+	depends = r-deeppincs
+	depends = r-keras
+	depends = r-mclust
+	depends = r-reticulate
+	depends = r-tensorflow
+	depends = r-ttgsea
+	depends = r-word2vec
+	optdepends = r-ggseqlogo
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-stringdist
+	optdepends = r-testthat
+	optdepends = r-vaexprs
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GenProSeq_1.6.0.tar.gz
+	md5sums = 15e772912f2019256df52d192edd5402
+	b2sums = b8a9e9720d3008a3c655ca8b3917ec5f23da709e39a69e47cb3c2f87bb1c0f01a65bc3b62777ae2226cf5d506fa75cb2eed0a45519e8a33ce4d0f964adbb22af
+
+pkgname = r-genproseq
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..3a9909e6dc92
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,50 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=GenProSeq
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Generating Protein Sequences with Deep Generative Models"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('Artistic-2.0')
+depends=(
+  r-catencoders
+  r-deeppincs
+  r-keras
+  r-mclust
+  r-reticulate
+  r-tensorflow
+  r-ttgsea
+  r-word2vec
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-ggseqlogo
+  r-knitr
+  r-rmarkdown
+  r-stringdist
+  r-testthat
+  r-vaexprs
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('15e772912f2019256df52d192edd5402')
+b2sums=('b8a9e9720d3008a3c655ca8b3917ec5f23da709e39a69e47cb3c2f87bb1c0f01a65bc3b62777ae2226cf5d506fa75cb2eed0a45519e8a33ce4d0f964adbb22af')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}