add r-genvisr

2 files changed, 108 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..26584d9897b6
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,46 @@
+pkgbase = r-genvisr
+	pkgdesc = Genomic Visualizations in R
+	pkgver = 1.28.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/GenVisR
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-annotationdbi
+	depends = r-biocgenerics
+	depends = r-biomart
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-data.table
+	depends = r-dbi
+	depends = r-ffield
+	depends = r-genomeinfodb
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-gridextra
+	depends = r-gtable
+	depends = r-gtools
+	depends = r-iranges
+	depends = r-plyr
+	depends = r-reshape2
+	depends = r-rsamtools
+	depends = r-scales
+	depends = r-variantannotation
+	depends = r-viridis
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-bsgenome.hsapiens.ucsc.hg38
+	optdepends = r-formatr
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-rmysql
+	optdepends = r-roxygen2
+	optdepends = r-testthat
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene
+	optdepends = r-vdiffr
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GenVisR_1.28.0.tar.gz
+	sha256sums = cc60bd6df4420e654979caeeefc615e1ef95b2b54b5b50c07298c84d087029b3
+
+pkgname = r-genvisr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..dab162529536
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,62 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GenVisR
+_pkgver=1.28.0
+pkgname=r-${_pkgname,,}
+pkgver=1.28.0
+pkgrel=1
+pkgdesc='Genomic Visualizations in R'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-biocgenerics
+  r-biomart
+  r-biostrings
+  r-bsgenome
+  r-data.table
+  r-dbi
+  r-ffield
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-ggplot2
+  r-gridextra
+  r-gtable
+  r-gtools
+  r-iranges
+  r-plyr
+  r-reshape2
+  r-rsamtools
+  r-scales
+  r-variantannotation
+  r-viridis
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-bsgenome.hsapiens.ucsc.hg38
+  r-formatr
+  r-knitr
+  r-rmarkdown
+  r-rmysql
+  r-roxygen2
+  r-testthat
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-txdb.hsapiens.ucsc.hg38.knowngene
+  r-vdiffr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('cc60bd6df4420e654979caeeefc615e1ef95b2b54b5b50c07298c84d087029b3')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: