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| author | Sukanka | 2022-06-06 10:53:17 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 10:53:17 +0800 |
| commit | 53cbf1b54f110600fed0a7cf16c587ee6f44ee25 (patch) | |
| tree | 6ef7c288edb40a081c4b72a8e6db749df846b1f4 | |
| download | aur-53cbf1b54f110600fed0a7cf16c587ee6f44ee25.tar.gz | |
add r-geoquery
| -rw-r--r-- | .SRCINFO | 28 | ||||
| -rw-r--r-- | PKGBUILD | 44 |
2 files changed, 72 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..2e5d18dd347e --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,28 @@ +pkgbase = r-geoquery + pkgdesc = Get data from NCBI Gene Expression Omnibus (GEO) + pkgver = 2.64.2 + pkgrel = 1 + url = https://bioconductor.org/packages/GEOquery + arch = any + license = GPL + depends = r + depends = r-biobase + depends = r-data.table + depends = r-dplyr + depends = r-httr + depends = r-limma + depends = r-magrittr + depends = r-r.utils + depends = r-readr + depends = r-tidyr + depends = r-xml2 + optdepends = r-biocgenerics + optdepends = r-covr + optdepends = r-knitr + optdepends = r-markdown + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/GEOquery_2.64.2.tar.gz + sha256sums = 3dc51776c33d45371f8913d2593ea0babbbebd1aed018e220e037d0505de73b3 + +pkgname = r-geoquery diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..c1bd4f29c82b --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,44 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=GEOquery +_pkgver=2.64.2 +pkgname=r-${_pkgname,,} +pkgver=2.64.2 +pkgrel=1 +pkgdesc='Get data from NCBI Gene Expression Omnibus (GEO)' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biobase + r-data.table + r-dplyr + r-httr + r-limma + r-magrittr + r-r.utils + r-readr + r-tidyr + r-xml2 +) +optdepends=( + r-biocgenerics + r-covr + r-knitr + r-markdown + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('3dc51776c33d45371f8913d2593ea0babbbebd1aed018e220e037d0505de73b3') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |