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author | Pekka Ristola | 2023-11-24 13:44:15 +0200 |
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committer | Pekka Ristola | 2023-11-24 13:44:15 +0200 |
commit | 8de5ca9693ea088b5589229d87c0633fde9801c8 (patch) | |
tree | 9c30f4f9ceb1f58bf61b30d6dd10dab6f363ab93 | |
download | aur-8de5ca9693ea088b5589229d87c0633fde9801c8.tar.gz |
Version 1.0.0
-rw-r--r-- | .SRCINFO | 34 | ||||
-rw-r--r-- | PKGBUILD | 60 |
2 files changed, 94 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..95f8dd282454 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,34 @@ +pkgbase = r-gg4way + pkgdesc = 4way Plots of Differential Expression + pkgver = 1.0.0 + pkgrel = 1 + url = https://bioconductor.org/packages/gg4way + arch = any + license = MIT + checkdepends = r-testthat + depends = r-deseq2 + depends = r-dplyr + depends = r-edger + depends = r-ggplot2 + depends = r-ggrepel + depends = r-glue + depends = r-janitor + depends = r-limma + depends = r-magrittr + depends = r-purrr + depends = r-rlang + depends = r-scales + depends = r-stringr + depends = r-tibble + depends = r-tidyr + optdepends = r-airway + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-org.hs.eg.db + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/gg4way_1.0.0.tar.gz + md5sums = 500552b8ab9c3fc5cc58fcf56378a928 + sha256sums = cf44e456e5a2be78941dc2cf8b1a918fe4da0246bd285e53d1dc2636bd442af7 + +pkgname = r-gg4way diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0f39b09836fc --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,60 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=gg4way +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="4way Plots of Differential Expression" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-deseq2 + r-dplyr + r-edger + r-ggplot2 + r-ggrepel + r-glue + r-janitor + r-limma + r-magrittr + r-purrr + r-rlang + r-scales + r-stringr + r-tibble + r-tidyr +) +checkdepends=( + r-testthat +) +optdepends=( + r-airway + r-biocstyle + r-knitr + r-org.hs.eg.db + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('500552b8ab9c3fc5cc58fcf56378a928') +sha256sums=('cf44e456e5a2be78941dc2cf8b1a918fe4da0246bd285e53d1dc2636bd442af7') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |