add r-gmicr

2 files changed, 80 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..518851e58a90
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,32 @@
+pkgbase = r-gmicr
+	pkgdesc = Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)
+	pkgver = 1.10.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/GmicR
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-annotationdbi
+	depends = r-ape
+	depends = r-bnlearn
+	depends = r-category
+	depends = r-data.table
+	depends = r-doparallel
+	depends = r-dt
+	depends = r-foreach
+	depends = r-gostats
+	depends = r-grain
+	depends = r-grbase
+	depends = r-gseabase
+	depends = r-org.hs.eg.db
+	depends = r-org.mm.eg.db
+	depends = r-reshape2
+	depends = r-shiny
+	depends = r-wgcna
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GmicR_1.10.0.tar.gz
+	sha256sums = 09c636c8957a3a34a4fe7636baaa5e00c4e81c956f653690505be2f86917090a
+
+pkgname = r-gmicr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9cb5ea33455f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GmicR
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-ape
+  r-bnlearn
+  r-category
+  r-data.table
+  r-doparallel
+  r-dt
+  r-foreach
+  r-gostats
+  r-grain
+  r-grbase
+  r-gseabase
+  r-org.hs.eg.db
+  r-org.mm.eg.db
+  r-reshape2
+  r-shiny
+  r-wgcna
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('09c636c8957a3a34a4fe7636baaa5e00c4e81c956f653690505be2f86917090a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: