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| author | Sukanka | 2022-06-06 11:44:38 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 11:44:38 +0800 |
| commit | e2f7b9c83a328d5a11c299079210a5050e8fb8a4 (patch) | |
| tree | 1c09d12c64b4ea8e3ff0a952c7964fb4324a4a6c | |
| download | aur-e2f7b9c83a328d5a11c299079210a5050e8fb8a4.tar.gz | |
add r-greylistchip
| -rw-r--r-- | .SRCINFO | 23 | ||||
| -rw-r--r-- | PKGBUILD | 39 |
2 files changed, 62 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..3b35b300a58b --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,23 @@ +pkgbase = r-greylistchip + pkgdesc = Grey Lists -- Mask Artefact Regions Based on ChIP Inputs + pkgver = 1.28.1 + pkgrel = 3 + url = https://bioconductor.org/packages/GreyListChIP + arch = any + license = Artistic2.0 + depends = r + depends = r-bsgenome + depends = r-genomeinfodb + depends = r-genomicalignments + depends = r-genomicranges + depends = r-rsamtools + depends = r-rtracklayer + depends = r-summarizedexperiment + optdepends = r-biocgenerics + optdepends = r-biocstyle + optdepends = r-bsgenome.hsapiens.ucsc.hg19 + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/GreyListChIP_1.28.1.tar.gz + sha256sums = 0f367385fc951724a1d494819618ea3880633d400b90ad570a14672537dfa270 + +pkgname = r-greylistchip diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..16ee595f6b37 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,39 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=GreyListChIP +_pkgver=1.28.1 +pkgname=r-${_pkgname,,} +pkgver=1.28.1 +pkgrel=3 +pkgdesc='Grey Lists -- Mask Artefact Regions Based on ChIP Inputs' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-bsgenome + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-rsamtools + r-rtracklayer + r-summarizedexperiment +) +optdepends=( + r-biocgenerics + r-biocstyle + r-bsgenome.hsapiens.ucsc.hg19 + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('0f367385fc951724a1d494819618ea3880633d400b90ad570a14672537dfa270') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |