first push

2 files changed, 62 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d40e97e28822
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,23 @@
+pkgbase = r-grohmm
+	pkgdesc = GRO-seq Analysis Pipeline
+	pkgver = 1.30.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/groHMM
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	optdepends = r-biocstyle
+	optdepends = r-edger
+	optdepends = r-genomicfeatures
+	optdepends = r-org.hs.eg.db
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/groHMM_1.30.1.tar.gz
+	sha256sums = 51e1d628ee6d0c1b48e6c1cd30e72d7bc839ce95bedee7ade00311cffa99556c
+
+pkgname = r-grohmm
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..dcd025803c94
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,39 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=groHMM
+_pkgver=1.30.1
+pkgname=r-${_pkgname,,}
+pkgver=1.30.1
+pkgrel=1
+pkgdesc='GRO-seq Analysis Pipeline'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-iranges
+  r-rtracklayer
+  r-s4vectors
+)
+optdepends=(
+  r-biocstyle
+  r-edger
+  r-genomicfeatures
+  r-org.hs.eg.db
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('51e1d628ee6d0c1b48e6c1cd30e72d7bc839ce95bedee7ade00311cffa99556c')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: