add r-gwastools

2 files changed, 86 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7fa9348808cd
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,35 @@
+pkgbase = r-gwastools
+	pkgdesc = Tools for Genome Wide Association Studies
+	pkgver = 1.42.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/GWASTools
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biobase
+	depends = r-data.table
+	depends = r-dbi
+	depends = r-dnacopy
+	depends = r-gdsfmt
+	depends = r-gwasexacthw
+	depends = r-lmtest
+	depends = r-logistf
+	depends = r-quantsmooth
+	depends = r-rsqlite
+	depends = r-sandwich
+	optdepends = r-biocgenerics
+	optdepends = r-biostrings
+	optdepends = r-genomicranges
+	optdepends = r-gwasdata
+	optdepends = r-iranges
+	optdepends = r-ncdf4
+	optdepends = r-parallel
+	optdepends = r-runit
+	optdepends = r-s4vectors
+	optdepends = r-snprelate
+	optdepends = r-snpstats
+	optdepends = r-variantannotation
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/GWASTools_1.42.0.tar.gz
+	sha256sums = 9fc08c28ece2f22ba9b834645f0c2e6bc0105a869f08338012c717a9ae620f58
+
+pkgname = r-gwastools
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..97f5191fe5cc
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GWASTools
+_pkgver=1.42.0
+pkgname=r-${_pkgname,,}
+pkgver=1.42.0
+pkgrel=1
+pkgdesc='Tools for Genome Wide Association Studies'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biobase
+  r-data.table
+  r-dbi
+  r-dnacopy
+  r-gdsfmt
+  r-gwasexacthw
+  r-lmtest
+  r-logistf
+  r-quantsmooth
+  r-rsqlite
+  r-sandwich
+)
+optdepends=(
+  r-biocgenerics
+  r-biostrings
+  r-genomicranges
+  r-gwasdata
+  r-iranges
+  r-ncdf4
+  r-parallel
+  r-runit
+  r-s4vectors
+  r-snprelate
+  r-snpstats
+  r-variantannotation
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9fc08c28ece2f22ba9b834645f0c2e6bc0105a869f08338012c717a9ae620f58')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: