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| author | Sukanka | 2022-06-06 12:03:10 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 12:03:10 +0800 |
| commit | c06775bccedd7baa63c2adc4edadd8c1a9e705d6 (patch) | |
| tree | b18096332748408c93d5fec235c4adb899ae7181 | |
| download | aur-c06775bccedd7baa63c2adc4edadd8c1a9e705d6.tar.gz | |
add r-harman
| -rw-r--r-- | .SRCINFO | 30 | ||||
| -rw-r--r-- | PKGBUILD | 46 |
2 files changed, 76 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..eb5915164c50 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,30 @@ +pkgbase = r-harman + pkgdesc = The removal of batch effects from datasets using a PCA and constrained optimisation based technique + pkgver = 1.24.0 + pkgrel = 1 + url = https://bioconductor.org/packages/Harman + arch = x86_64 + license = GPL + depends = r + depends = r-rcpp + depends = r-matrixstats + depends = r-ckmeans.1d.dp + optdepends = r-affydata + optdepends = r-biocgenerics + optdepends = r-biocstyle + optdepends = r-bladderbatch + optdepends = r-harmandata + optdepends = r-knitr + optdepends = r-limma + optdepends = r-lumi + optdepends = r-minfi + optdepends = r-minfidata + optdepends = r-msmseda + optdepends = r-rcolorbrewer + optdepends = r-rmarkdown + optdepends = r-runit + optdepends = r-sva + source = https://bioconductor.org/packages/release/bioc/src/contrib/Harman_1.24.0.tar.gz + sha256sums = 33e277bca7ae83d037e3eab51aaa86bde28ee9b1d9dece5560806c554d4c96e5 + +pkgname = r-harman diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..8defa11c4352 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,46 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=Harman +_pkgver=1.24.0 +pkgname=r-${_pkgname,,} +pkgver=1.24.0 +pkgrel=1 +pkgdesc='The removal of batch effects from datasets using a PCA and constrained optimisation based technique' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-rcpp + r-matrixstats + r-ckmeans.1d.dp +) +optdepends=( + r-affydata + r-biocgenerics + r-biocstyle + r-bladderbatch + r-harmandata + r-knitr + r-limma + r-lumi + r-minfi + r-minfidata + r-msmseda + r-rcolorbrewer + r-rmarkdown + r-runit + r-sva +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('33e277bca7ae83d037e3eab51aaa86bde28ee9b1d9dece5560806c554d4c96e5') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |