Version 1.1.0

2 files changed, 95 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d188c361cb3c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,35 @@
+pkgbase = r-harmony
+	pkgdesc = Fast, Sensitive, and Accurate Integration of Single Cell Data
+	pkgver = 1.1.0
+	pkgrel = 1
+	url = https://cran.r-project.org/package=harmony
+	arch = x86_64
+	license = GPL3
+	checkdepends = r-testthat
+	makedepends = r-rcpparmadillo
+	makedepends = r-rcppprogress
+	depends = blas
+	depends = lapack
+	depends = r-cowplot
+	depends = r-dplyr
+	depends = r-ggplot2
+	depends = r-rcpp
+	depends = r-rhpcblasctl
+	depends = r-rlang
+	depends = r-tibble
+	optdepends = r-data.table
+	optdepends = r-ggrepel
+	optdepends = r-ggthemes
+	optdepends = r-knitr
+	optdepends = r-patchwork
+	optdepends = r-rmarkdown
+	optdepends = r-seurat
+	optdepends = r-singlecellexperiment
+	optdepends = r-testthat
+	optdepends = r-tidyr
+	optdepends = r-tidyverse
+	source = https://cran.r-project.org/src/contrib/harmony_1.1.0.tar.gz
+	md5sums = fc39f5bc1c1a89ef071f8c85cbc60619
+	sha256sums = 7bcdd5cb7e99e791e0aa11aa3e5316cbdb884270a3528f8a5fe5b8410169c167
+
+pkgname = r-harmony
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..712a07c84050
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,60 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=harmony
+_pkgver=1.1.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Fast, Sensitive, and Accurate Integration of Single Cell Data"
+arch=(x86_64)
+url="https://cran.r-project.org/package=${_pkgname}"
+license=(GPL3)
+depends=(
+  blas
+  lapack
+  r-cowplot
+  r-dplyr
+  r-ggplot2
+  r-rcpp
+  r-rhpcblasctl
+  r-rlang
+  r-tibble
+)
+makedepends=(
+  r-rcpparmadillo
+  r-rcppprogress
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-data.table
+  r-ggrepel
+  r-ggthemes
+  r-knitr
+  r-patchwork
+  r-rmarkdown
+  r-seurat
+  r-singlecellexperiment
+  r-testthat
+  r-tidyr
+  r-tidyverse
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('fc39f5bc1c1a89ef071f8c85cbc60619')
+sha256sums=('7bcdd5cb7e99e791e0aa11aa3e5316cbdb884270a3528f8a5fe5b8410169c167')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}