Version 1.0.0

2 files changed, 75 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..0e92fe9bfe74
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,26 @@
+pkgbase = r-heron
+	pkgdesc = Hierarchical Epitope pROtein biNding
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/HERON
+	arch = any
+	license = GPL3
+	checkdepends = r-testthat
+	depends = r-data.table
+	depends = r-genomicranges
+	depends = r-harmonicmeanp
+	depends = r-iranges
+	depends = r-limma
+	depends = r-matrixstats
+	depends = r-metap
+	depends = r-s4vectors
+	depends = r-spdep
+	depends = r-summarizedexperiment
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/HERON_1.0.0.tar.gz
+	md5sums = 9c146a8d99bada338098732e1de5a5e2
+	sha256sums = b1a365540c32dac743dc87e5428e26692fd7174ec8a76f014d19e727ab60e34b
+
+pkgname = r-heron
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..06193a41c807
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=HERON
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Hierarchical Epitope pROtein biNding"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-data.table
+  r-genomicranges
+  r-harmonicmeanp
+  r-iranges
+  r-limma
+  r-matrixstats
+  r-metap
+  r-s4vectors
+  r-spdep
+  r-summarizedexperiment
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('9c146a8d99bada338098732e1de5a5e2')
+sha256sums=('b1a365540c32dac743dc87e5428e26692fd7174ec8a76f014d19e727ab60e34b')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}