Version 1.0.0

2 files changed, 87 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..adec5338674a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,34 @@
+pkgbase = r-hicool
+	pkgdesc = HiCool
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/HiCool
+	arch = any
+	license = MIT
+	depends = r-basilisk
+	depends = r-biocio
+	depends = r-dplyr
+	depends = r-genomicranges
+	depends = r-hicexperiment
+	depends = r-interactionset
+	depends = r-iranges
+	depends = r-plotly
+	depends = r-reticulate
+	depends = r-rmarkdown
+	depends = r-rmdformats
+	depends = r-s4vectors
+	depends = r-sessioninfo
+	depends = r-stringr
+	depends = r-vroom
+	optdepends = r-annotationhub
+	optdepends = r-biocfilecache
+	optdepends = r-biocstyle
+	optdepends = r-hicontacts
+	optdepends = r-hicontactsdata
+	optdepends = r-knitr
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/HiCool_1.0.0.tar.gz
+	md5sums = 85a6824de7561e4879ae698959606ae3
+	sha256sums = d44d599c72556a83602fcdb85c1fca32a1d2b4e2b449bf14808697b5e2bd2283
+
+pkgname = r-hicool
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..578632a9a7f3
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=HiCool
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="HiCool"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-basilisk
+  r-biocio
+  r-dplyr
+  r-genomicranges
+  r-hicexperiment
+  r-interactionset
+  r-iranges
+  r-plotly
+  r-reticulate
+  r-rmarkdown
+  r-rmdformats
+  r-s4vectors
+  r-sessioninfo
+  r-stringr
+  r-vroom
+)
+optdepends=(
+  r-annotationhub
+  r-biocfilecache
+  r-biocstyle
+  r-hicontacts
+  r-hicontactsdata
+  r-knitr
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('85a6824de7561e4879ae698959606ae3')
+sha256sums=('d44d599c72556a83602fcdb85c1fca32a1d2b4e2b449bf14808697b5e2bd2283')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}