add r-hitc

2 files changed, 56 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b3b24cde7b3f
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,20 @@
+pkgbase = r-hitc
+	pkgdesc = High Throughput Chromosome Conformation Capture analysis
+	pkgver = 1.40.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/HiTC
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biostrings
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rcolorbrewer
+	depends = r-rtracklayer
+	optdepends = r-biocstyle
+	optdepends = r-hicdatahumanimr90
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/HiTC_1.40.0.tar.gz
+	sha256sums = 9ae87b73e957f5afcc80f4e6adb389f6ab49f3224521074153cc089533857ade
+
+pkgname = r-hitc
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..199b9278e504
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,36 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=HiTC
+_pkgver=1.40.0
+pkgname=r-${_pkgname,,}
+pkgver=1.40.0
+pkgrel=1
+pkgdesc='High Throughput Chromosome Conformation Capture analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biostrings
+  r-genomeinfodb
+  r-genomicranges
+  r-iranges
+  r-rcolorbrewer
+  r-rtracklayer
+)
+optdepends=(
+  r-biocstyle
+  r-hicdatahumanimr90
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9ae87b73e957f5afcc80f4e6adb389f6ab49f3224521074153cc089533857ade')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: