add r-htsfilter

2 files changed, 58 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..4b9fee5f5281
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-htsfilter
+	pkgdesc = Filter replicated high-throughput transcriptome sequencing data
+	pkgver = 1.36.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/HTSFilter
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biobase
+	depends = r-biocparallel
+	depends = r-deseq2
+	depends = r-edger
+	optdepends = r-biocstyle
+	optdepends = r-edaseq
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/HTSFilter_1.36.0.tar.gz
+	sha256sums = 382845b12d327299c4e7d584aa548e4bd2cb99b694127c2acac9c03850d38768
+
+pkgname = r-htsfilter
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9aaeec339cca
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,37 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=HTSFilter
+_pkgver=1.36.0
+pkgname=r-${_pkgname,,}
+pkgver=1.36.0
+pkgrel=1
+pkgdesc='Filter replicated high-throughput transcriptome sequencing data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biobase
+  r-biocparallel
+  r-deseq2
+  r-edger
+)
+optdepends=(
+  r-biocstyle
+  r-edaseq
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('382845b12d327299c4e7d584aa548e4bd2cb99b694127c2acac9c03850d38768')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: