add r-hummingbird

2 files changed, 52 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..2ccbbc0e74ba
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,18 @@
+pkgbase = r-hummingbird
+	pkgdesc = Bayesian Hidden Markov Model for the detection of differentially methylated regions
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/hummingbird
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rcpp
+	depends = r-summarizedexperiment
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/hummingbird_1.6.0.tar.gz
+	sha256sums = 24d85eb8c51906091debbe5f4053b3879a0c3bd4db3e65f6669c32e9952ec3ff
+
+pkgname = r-hummingbird
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d0222b9111ad
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,34 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=hummingbird
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='Bayesian Hidden Markov Model for the detection of differentially methylated regions'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-genomicranges
+  r-iranges
+  r-rcpp
+  r-summarizedexperiment
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('24d85eb8c51906091debbe5f4053b3879a0c3bd4db3e65f6669c32e9952ec3ff')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: