add r-icobra

2 files changed, 70 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..c6bb9aa671c5
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-icobra
+	pkgdesc = Comparison and Visualization of Ranking and Assignment Methods
+	pkgver = 1.24.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/iCOBRA
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-dplyr
+	depends = r-dt
+	depends = r-ggplot2
+	depends = r-limma
+	depends = r-reshape2
+	depends = r-rocr
+	depends = r-scales
+	depends = r-shiny
+	depends = r-shinybs
+	depends = r-shinydashboard
+	depends = r-upsetr
+	depends = r-markdown
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/iCOBRA_1.24.1.tar.gz
+	sha256sums = 491bea9d167ed3f437ca56b0740092a4ebde4fefa355e188ded438fd565179bf
+
+pkgname = r-icobra
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1c3b82dbab37
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,43 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=iCOBRA
+_pkgver=1.24.1
+pkgname=r-${_pkgname,,}
+pkgver=1.24.1
+pkgrel=1
+pkgdesc='Comparison and Visualization of Ranking and Assignment Methods'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-dplyr
+  r-dt
+  r-ggplot2
+  r-limma
+  r-reshape2
+  r-rocr
+  r-scales
+  r-shiny
+  r-shinybs
+  r-shinydashboard
+  r-upsetr
+  r-markdown
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('491bea9d167ed3f437ca56b0740092a4ebde4fefa355e188ded438fd565179bf')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: