diff options
author | Pekka Ristola | 2023-10-22 16:29:42 +0300 |
---|---|---|
committer | Pekka Ristola | 2023-10-22 16:29:42 +0300 |
commit | f0523888a17711271924e24db559880f1cd358f4 (patch) | |
tree | 4d2fe784446e8c0d3ac7e44bedc95afa224e90b3 | |
download | aur-f0523888a17711271924e24db559880f1cd358f4.tar.gz |
Version 1.2.0
-rw-r--r-- | .SRCINFO | 31 | ||||
-rw-r--r-- | PKGBUILD | 54 |
2 files changed, 85 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..0f01849a236a --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,31 @@ +pkgbase = r-ifaa + pkgdesc = Robust Inference for Absolute Abundance in Microbiome Analysis + pkgver = 1.2.0 + pkgrel = 1 + url = https://bioconductor.org/packages/IFAA + arch = any + license = GPL2 + checkdepends = r-biocgenerics + checkdepends = r-runit + depends = r-desctools + depends = r-doparallel + depends = r-dorng + depends = r-foreach + depends = r-glmnet + depends = r-hdci + depends = r-mathjaxr + depends = r-matrixextra + depends = r-parallelly + depends = r-s4vectors + depends = r-stringr + depends = r-summarizedexperiment + optdepends = r-biocgenerics + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/IFAA_1.2.0.tar.gz + md5sums = 2fed85b602afd876a82a6f150f7edcc6 + sha256sums = b35d7c37bb908bb3efaab5796eb45226c7bfca005260091fe324fb36153a7daf + +pkgname = r-ifaa diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..e9db919bfb5d --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,54 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=IFAA +_pkgver=1.2.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Robust Inference for Absolute Abundance in Microbiome Analysis" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL2) +depends=( + r-desctools + r-doparallel + r-dorng + r-foreach + r-glmnet + r-hdci + r-mathjaxr + r-matrixextra + r-parallelly + r-s4vectors + r-stringr + r-summarizedexperiment +) +checkdepends=( + r-biocgenerics + r-runit +) +optdepends=( + r-biocgenerics + r-biocstyle + r-knitr + r-rmarkdown + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('2fed85b602afd876a82a6f150f7edcc6') +sha256sums=('b35d7c37bb908bb3efaab5796eb45226c7bfca005260091fe324fb36153a7daf') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" Rscript --vanilla runTests.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |