add r-ioniser

2 files changed, 79 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..bf88ce8449b1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,31 @@
+pkgbase = r-ioniser
+	pkgdesc = Quality Assessment Tools for Oxford Nanopore MinION data
+	pkgver = 2.20.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/IONiseR
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biostrings
+	depends = r-bit64
+	depends = r-dplyr
+	depends = r-ggplot2
+	depends = r-magrittr
+	depends = r-rhdf5
+	depends = r-shortread
+	depends = r-stringr
+	depends = r-tibble
+	depends = r-tidyr
+	depends = r-xvector
+	optdepends = r-biocstyle
+	optdepends = r-gridextra
+	optdepends = r-knitr
+	optdepends = r-minionsummarydata
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/IONiseR_2.20.0.tar.gz
+	sha256sums = 9137412eb8c8d802834dcd6d7537a056037738f273649277a22718e8580bfd31
+
+pkgname = r-ioniser
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2e2d667f21f5
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=IONiseR
+_pkgver=2.20.0
+pkgname=r-${_pkgname,,}
+pkgver=2.20.0
+pkgrel=1
+pkgdesc='Quality Assessment Tools for Oxford Nanopore MinION data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-bit64
+  r-dplyr
+  r-ggplot2
+  r-magrittr
+  r-rhdf5
+  r-shortread
+  r-stringr
+  r-tibble
+  r-tidyr
+  r-xvector
+)
+optdepends=(
+  r-biocstyle
+  r-gridextra
+  r-knitr
+  r-minionsummarydata
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9137412eb8c8d802834dcd6d7537a056037738f273649277a22718e8580bfd31')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: