Fixed PKGBUILD

3 files changed, 41 insertions, 23 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 32da6e934784..cf8ec1f91040 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,16 +1,26 @@
 pkgbase = r-iranges
-	pkgdesc = Infrastructure for manipulating intervals on sequences
-	pkgver = 2.20.1
+	pkgdesc = Foundation of integer range manipulation in Bioconductor
+	pkgver = 2.20.2
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/IRanges.html
+	arch = i686
 	arch = x86_64
 	license = Artistic-2.0
-	depends = r
-	depends = r-utils
-	depends = r-biocgenerics
-	depends = r-s4vectors
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.20.1.tar.gz
-	sha1sums = 6cd7971d8e408836c090d87b1ddd94e0aca6a685
+	makedepends = gcc
+	depends = r>=3.1.0
+	depends = r-biocgenerics>=0.25.3
+	depends = r-s4vectors>=0.23.22
+	optdepends = r-xvector
+	optdepends = r-genomicranges
+	optdepends = r-rsamtools
+	optdepends = r-genomicalignments
+	optdepends = r-genomicfeatures
+	optdepends = r-bsgenome.celegans.ucsc.ce2
+	optdepends = r-pasillabamsubset
+	optdepends = r-runit
+	optdepends = r-biocstyle
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.20.2.tar.gz
+	sha1sums = 43b6501d37212513cbc2bacc2ad348d3baa07ede
 
 pkgname = r-iranges
 
diff --git a/.gitignore b/.gitignore
deleted file mode 100644
index 6ae0b18a1f6c..000000000000
--- a/.gitignore
+++ /dev/null
@@ -1,4 +0,0 @@
-/pkg
-/src
-*.tar.gz
-*.tar.xz
diff --git a/PKGBUILD b/PKGBUILD
index d0a72ff99ee3..23cab170f8a7 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,19 +1,31 @@
+# Maintainer: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 # Contributor: Grey Christoforo <first name at last name dot net>
+
+_bcname=IRanges
+_bcver=2.20.2
 pkgname=r-iranges
-_bc_name=IRanges
-pkgver=2.20.1
+pkgver=${_bcver//[:-]/.}
 pkgrel=1
-pkgdesc="Infrastructure for manipulating intervals on sequences"
-url="https://bioconductor.org/packages/release/bioc/html/IRanges.html"
-arch=("x86_64")
+pkgdesc="Foundation of integer range manipulation in Bioconductor"
+url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
+arch=(i686 x86_64)
 license=('Artistic-2.0')
-depends=('r' 'r-utils' 'r-biocgenerics' 'r-s4vectors')
-source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bc_name}_${pkgver}.tar.gz")
-sha1sums=('6cd7971d8e408836c090d87b1ddd94e0aca6a685')
+depends=('r>=3.1.0' 'r-biocgenerics>=0.25.3' 'r-s4vectors>=0.23.22')
+makedepends=('gcc')
+optdepends=('r-xvector' 'r-genomicranges' 'r-rsamtools' 'r-genomicalignments' 'r-genomicfeatures' 'r-bsgenome.celegans.ucsc.ce2' 'r-pasillabamsubset' 'r-runit' 'r-biocstyle')
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
+sha1sums=('43b6501d37212513cbc2bacc2ad348d3baa07ede')
+
+build(){
+  cd "${srcdir}"
+
+  R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l $srcdir
+}
 
 package() {
- mkdir -p $pkgdir/usr/lib/R/library
- cd $srcdir
+  cd "${srcdir}"
 
- R CMD INSTALL -l $pkgdir/usr/lib/R/library ./${_bc_name}
+  install -dm0755 "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "$_bcname" "$pkgdir/usr/lib/R/library"
 }
+