upgpkg: r-iranges 2.30.0-1

upstream release

upstream release

2 files changed, 29 insertions, 11 deletions

diff --git a/.SRCINFO b/.SRCINFO
index a41204434480..98662931001f 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
 pkgbase = r-iranges
 	pkgdesc = Foundation of integer range manipulation in Bioconductor
-	pkgver = 2.28.0
+	pkgver = 2.30.0
 	pkgrel = 1
 	url = https://bioconductor.org/packages/release/bioc/html/IRanges.html
 	arch = i686
@@ -8,7 +8,7 @@ pkgbase = r-iranges
 	license = Artistic-2.0
 	depends = r>=4.0.0
 	depends = r-biocgenerics>=0.39.2
-	depends = r-s4vectors>=0.29.19
+	depends = r-s4vectors>=0.33.3
 	optdepends = r-xvector
 	optdepends = r-genomicranges
 	optdepends = r-rsamtools
@@ -18,7 +18,7 @@ pkgbase = r-iranges
 	optdepends = r-pasillabamsubset
 	optdepends = r-runit
 	optdepends = r-biocstyle
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.28.0.tar.gz
-	sha256sums = ef860c47be9fbab4a5f413d17401d17ab910ce85b9981058609cbbc5c310fa1f
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.30.0.tar.gz
+	sha256sums = 1331cf39cab3d0e2233247bb6e9d439e0e804c2a3336c103cb195fb2802ddd41
 
 pkgname = r-iranges
diff --git a/PKGBUILD b/PKGBUILD
index f0136d6abf69..b66a67de254e 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,8 +1,9 @@
+# Maintainer: peippo <christoph+aur@christophfink.com>
 # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 # Contributor: Grey Christoforo <first name at last name dot net>
 
 _bcname=IRanges
-_bcver=2.28.0
+_bcver=2.30.0
 pkgname=r-${_bcname,,}
 pkgver=${_bcver//[:-]/.}
 pkgrel=1
@@ -10,17 +11,34 @@ pkgdesc="Foundation of integer range manipulation in Bioconductor"
 arch=(i686 x86_64)
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
 license=(Artistic-2.0)
-depends=('r>=4.0.0' 'r-biocgenerics>=0.39.2' 'r-s4vectors>=0.29.19')
-optdepends=(r-xvector r-genomicranges r-rsamtools r-genomicalignments r-genomicfeatures r-bsgenome.celegans.ucsc.ce2 r-pasillabamsubset r-runit r-biocstyle)
+depends=(
+    "r>=4.0.0"
+	"r-biocgenerics>=0.39.2"
+	"r-s4vectors>=0.33.3"
+)
+optdepends=(
+    r-xvector
+	r-genomicranges
+	r-rsamtools
+	r-genomicalignments
+	r-genomicfeatures
+	r-bsgenome.celegans.ucsc.ce2
+	r-pasillabamsubset
+	r-runit
+	r-biocstyle
+)
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
-sha256sums=('ef860c47be9fbab4a5f413d17401d17ab910ce85b9981058609cbbc5c310fa1f')
+sha256sums=("1331cf39cab3d0e2233247bb6e9d439e0e804c2a3336c103cb195fb2802ddd41")
 
 build() {
-  R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
+    R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+    install -dm0755 "${pkgdir}/usr/lib/R/library"
+    cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
 
-  cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
+    if [[ -f "${_cranname}/LICENSE" ]]; then
+        install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+    fi
 }