add r-karyoploter

2 files changed, 96 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f096f8f4c6f3
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-karyoploter
+	pkgdesc = Plot customizable linear genomes displaying arbitrary data
+	pkgver = 1.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/karyoploteR
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-annotationdbi
+	depends = r-bamsignals
+	depends = r-bezier
+	depends = r-biovizbase
+	depends = r-digest
+	depends = r-genomeinfodb
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-memoise
+	depends = r-regioner
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-variantannotation
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19.masked
+	optdepends = r-knitr
+	optdepends = r-magrittr
+	optdepends = r-markdown
+	optdepends = r-org.hs.eg.db
+	optdepends = r-org.mm.eg.db
+	optdepends = r-pasillabamsubset
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/karyoploteR_1.22.0.tar.gz
+	sha256sums = 53db794dbad7df4560711dddd0f917023b1ea32bde49fb1aa37bc61179c25c41
+
+pkgname = r-karyoploter
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..03fb74e51333
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,56 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=karyoploteR
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='Plot customizable linear genomes displaying arbitrary data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationdbi
+  r-bamsignals
+  r-bezier
+  r-biovizbase
+  r-digest
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-iranges
+  r-memoise
+  r-regioner
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+  r-variantannotation
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-bsgenome.hsapiens.ucsc.hg19.masked
+  r-knitr
+  r-magrittr
+  r-markdown
+  r-org.hs.eg.db
+  r-org.mm.eg.db
+  r-pasillabamsubset
+  r-rmarkdown
+  r-testthat
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-txdb.mmusculus.ucsc.mm10.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('53db794dbad7df4560711dddd0f917023b1ea32bde49fb1aa37bc61179c25c41')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: