Version 1.0.4

2 files changed, 108 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..17b17ba25cdd
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-lemur
+	pkgdesc = Latent Embedding Multivariate Regression
+	pkgver = 1.0.4
+	pkgrel = 1
+	url = https://bioconductor.org/packages/lemur
+	arch = x86_64
+	license = MIT
+	checkdepends = r-edger
+	checkdepends = r-testthat
+	makedepends = r-rcpparmadillo
+	depends = blas
+	depends = r-biocgenerics
+	depends = r-biocneighbors
+	depends = r-delayedmatrixstats
+	depends = r-glmgampoi
+	depends = r-harmony
+	depends = r-hdf5array
+	depends = r-irlba
+	depends = r-limma
+	depends = r-matrixgenerics
+	depends = r-matrixstats
+	depends = r-rcpp
+	depends = r-rlang
+	depends = r-s4vectors
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	depends = r-vctrs
+	optdepends = r-biocstyle
+	optdepends = r-dplyr
+	optdepends = r-edger
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-tidyverse
+	optdepends = r-uwot
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/lemur_1.0.4.tar.gz
+	md5sums = 76ef0d01a8f6f23e0f125274af96522d
+	sha256sums = 2101d7bd7274d40f2402b50a5b69bc2296c6eec73c93e2061b40fb8bae4acb9b
+
+pkgname = r-lemur
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2784742097a2
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,68 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=lemur
+_pkgver=1.0.4
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Latent Embedding Multivariate Regression"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  blas
+  r-biocgenerics
+  r-biocneighbors
+  r-delayedmatrixstats
+  r-glmgampoi
+  r-harmony
+  r-hdf5array
+  r-irlba
+  r-limma
+  r-matrixgenerics
+  r-matrixstats
+  r-rcpp
+  r-rlang
+  r-s4vectors
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-vctrs
+)
+makedepends=(
+  r-rcpparmadillo
+)
+checkdepends=(
+  r-edger
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-dplyr
+  r-edger
+  r-knitr
+  r-rmarkdown
+  r-testthat
+  r-tidyverse
+  r-uwot
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('76ef0d01a8f6f23e0f125274af96522d')
+sha256sums=('2101d7bd7274d40f2402b50a5b69bc2296c6eec73c93e2061b40fb8bae4acb9b')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}