[lilac] updated to 3.58.0-1

2 files changed, 23 insertions, 22 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 1bfa4319e006..8d89233fd3db 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,26 +1,26 @@
 pkgbase = r-limma
 	pkgdesc = Linear Models for Microarray Data
-	pkgver = 3.56.2
+	pkgver = 3.58.0
 	pkgrel = 1
 	url = https://bioconductor.org/packages/limma
 	arch = x86_64
 	license = GPL
-	depends = r
+	depends = r-statmod
 	optdepends = r-affy
 	optdepends = r-annotationdbi
 	optdepends = r-biasedurn
 	optdepends = r-biobase
+	optdepends = r-biocstyle
 	optdepends = r-ellipse
 	optdepends = r-go.db
 	optdepends = r-gplots
 	optdepends = r-illuminaio
+	optdepends = r-knitr
 	optdepends = r-locfit
-	optdepends = r-mass
 	optdepends = r-org.hs.eg.db
-	optdepends = r-splines
-	optdepends = r-statmod
 	optdepends = r-vsn
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/limma_3.56.2.tar.gz
-	sha256sums = 19d8090708a38d7320e797df27455e60eaafdc02f97ecae62537d8ec925a3e56
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/limma_3.58.0.tar.gz
+	md5sums = 521e5f19c19affa0ead9e097967701e8
+	sha256sums = ee4510e8208e564dc5d32c2ba58741b6a3c155e9b90c5fe4a299e98886f71fd6
 
 pkgname = r-limma
diff --git a/PKGBUILD b/PKGBUILD
index 3f593de862ec..95958352808e 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,42 +1,43 @@
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=limma
-_pkgver=3.56.2
+_pkgver=3.58.0
 pkgname=r-${_pkgname,,}
-pkgver=3.56.2
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Linear Models for Microarray Data'
-arch=('x86_64')
+pkgdesc="Linear Models for Microarray Data"
+arch=(x86_64)
 url="https://bioconductor.org/packages/${_pkgname}"
-license=('GPL')
+license=(GPL)
 depends=(
-  r
+  r-statmod
 )
 optdepends=(
   r-affy
   r-annotationdbi
   r-biasedurn
   r-biobase
+  r-biocstyle
   r-ellipse
   r-go.db
   r-gplots
   r-illuminaio
+  r-knitr
   r-locfit
-  r-mass
   r-org.hs.eg.db
-  r-splines
-  r-statmod
   r-vsn
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('19d8090708a38d7320e797df27455e60eaafdc02f97ecae62537d8ec925a3e56')
+md5sums=('521e5f19c19affa0ead9e097967701e8')
+sha256sums=('ee4510e8208e564dc5d32c2ba58741b6a3c155e9b90c5fe4a299e98886f71fd6')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et: