add r-lola

2 files changed, 68 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..7fa124290a38
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,26 @@
+pkgbase = r-lola
+	pkgdesc = Locus overlap analysis for enrichment of genomic ranges
+	pkgver = 1.26.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/LOLA
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-data.table
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-reshape2
+	depends = r-s4vectors
+	optdepends = r-biocstyle
+	optdepends = r-ggplot2
+	optdepends = r-knitr
+	optdepends = r-parallel
+	optdepends = r-qvalue
+	optdepends = r-rmarkdown
+	optdepends = r-simplecache
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/LOLA_1.26.0.tar.gz
+	sha256sums = 983e2379e63e15af22634cca72d1af7bef0c971923fa291e46acfc75fae65d90
+
+pkgname = r-lola
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5e738a439bef
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,42 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=LOLA
+_pkgver=1.26.0
+pkgname=r-${_pkgname,,}
+pkgver=1.26.0
+pkgrel=1
+pkgdesc='Locus overlap analysis for enrichment of genomic ranges'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-data.table
+  r-genomicranges
+  r-iranges
+  r-reshape2
+  r-s4vectors
+)
+optdepends=(
+  r-biocstyle
+  r-ggplot2
+  r-knitr
+  r-parallel
+  r-qvalue
+  r-rmarkdown
+  r-simplecache
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('983e2379e63e15af22634cca72d1af7bef0c971923fa291e46acfc75fae65d90')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: