add r-mafdb.gnomadex.r2.1.hs37d5

2 files changed, 54 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..0d202161a0f1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,19 @@
+pkgbase = r-mafdb.gnomadex.r2.1.hs37d5
+	pkgdesc = Minor allele frequency data from gnomAD exomes release 2.1 for hs37d5
+	pkgver = 3.10.0
+	pkgrel = 3
+	url = https://bioconductor.org/packages/MafDb.gnomADex.r2.1.hs37d5
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-bsgenome
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-genomicscores
+	depends = r-iranges
+	depends = r-s4vectors
+	optdepends = r-snplocs.hsapiens.dbsnp144.grch37
+	source = https://bioconductor.org/packages/release/data/annotation/src/contrib/MafDb.gnomADex.r2.1.hs37d5_3.10.0.tar.gz
+	sha256sums = 5e35f5979fe9875feda4ee4ee19a1b340ee7def953578d9fee4d461a2bb38278
+
+pkgname = r-mafdb.gnomadex.r2.1.hs37d5
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0946f2c429c5
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,35 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=MafDb.gnomADex.r2.1.hs37d5
+_pkgver=3.10.0
+pkgname=r-${_pkgname,,}
+pkgver=3.10.0
+pkgrel=3
+pkgdesc='Minor allele frequency data from gnomAD exomes release 2.1 for hs37d5'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-bsgenome
+  r-genomeinfodb
+  r-genomicranges
+  r-genomicscores
+  r-iranges
+  r-s4vectors
+)
+optdepends=(
+  r-snplocs.hsapiens.dbsnp144.grch37
+)
+source=("https://bioconductor.org/packages/release/data/annotation/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('5e35f5979fe9875feda4ee4ee19a1b340ee7def953578d9fee4d461a2bb38278')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: