add r-maftools

2 files changed, 86 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..e5777e604174
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,34 @@
+pkgbase = r-maftools
+	pkgdesc = Summarize, Analyze and Visualize MAF Files
+	pkgver = 2.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/maftools
+	arch = x86_64
+	license = MIT
+	depends = r
+	depends = r-data.table
+	depends = r-rcolorbrewer
+	depends = r-rhtslib
+	depends = r-zlibbioc
+	depends = make
+	depends = r-dnacopy
+	optdepends = r-berryfunctions
+	optdepends = r-biostrings
+	optdepends = r-bsgenome
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-curl
+	optdepends = r-genomicranges
+	optdepends = r-iranges
+	optdepends = r-knitr
+	optdepends = r-mclust
+	optdepends = r-multiassayexperiment
+	optdepends = r-nmf
+	optdepends = r-pheatmap
+	optdepends = r-r.utils
+	optdepends = r-raggedexperiment
+	optdepends = r-rmarkdown
+	optdepends = r-s4vectors
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/maftools_2.12.0.tar.gz
+	sha256sums = 66ceeb909cc6bd3a952f305273f95a6ee836c5033252c58925463bb24b8a0ebf
+
+pkgname = r-maftools
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9e133c3c6eaa
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# system requirements: GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=maftools
+_pkgver=2.12.0
+pkgname=r-${_pkgname,,}
+pkgver=2.12.0
+pkgrel=1
+pkgdesc='Summarize, Analyze and Visualize MAF Files'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-data.table
+  r-rcolorbrewer
+  r-rhtslib
+  r-zlibbioc
+  make
+  r-dnacopy
+)
+optdepends=(
+  r-berryfunctions
+  r-biostrings
+  r-bsgenome
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-curl
+  r-genomicranges
+  r-iranges
+  r-knitr
+  r-mclust
+  r-multiassayexperiment
+  r-nmf
+  r-pheatmap
+  r-r.utils
+  r-raggedexperiment
+  r-rmarkdown
+  r-s4vectors
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('66ceeb909cc6bd3a952f305273f95a6ee836c5033252c58925463bb24b8a0ebf')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: