diff options
| author | Pekka Ristola | 2023-11-05 20:47:04 +0200 |
|---|---|---|
| committer | Pekka Ristola | 2023-11-05 20:47:04 +0200 |
| commit | fac81fac891f987d3436a146c3bb41da17ac290a (patch) | |
| tree | 665551109c8a39fe2c8b8b83a77d40b6343eb41b | |
| download | aur-fac81fac891f987d3436a146c3bb41da17ac290a.tar.gz | |
Version 1.2.0
| -rw-r--r-- | .SRCINFO | 24 | ||||
| -rw-r--r-- | PKGBUILD | 43 |
2 files changed, 67 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..9db85fbd87e0 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,24 @@ +pkgbase = r-mbqtl + pkgdesc = mbQTL: A package for SNP-Taxa mGWAS analysis + pkgver = 1.2.0 + pkgrel = 1 + url = https://bioconductor.org/packages/mbQTL + arch = any + license = MIT + depends = r-broom + depends = r-dplyr + depends = r-ggplot2 + depends = r-matrixeqtl + depends = r-metagenomeseq + depends = r-pheatmap + depends = r-readxl + depends = r-stringr + depends = r-tidyr + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + source = https://bioconductor.org/packages/release/bioc/src/contrib/mbQTL_1.2.0.tar.gz + md5sums = 5b8464d079a9297ed19fcdfade113190 + sha256sums = 501e5ac9d5faa96cef0efa5469e679fd5fbb04e608a8940adab7b8d764ae4706 + +pkgname = r-mbqtl diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0acf175d04a9 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,43 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=mbQTL +_pkgver=1.2.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="mbQTL: A package for SNP-Taxa mGWAS analysis" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-broom + r-dplyr + r-ggplot2 + r-matrixeqtl + r-metagenomeseq + r-pheatmap + r-readxl + r-stringr + r-tidyr +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('5b8464d079a9297ed19fcdfade113190') +sha256sums=('501e5ac9d5faa96cef0efa5469e679fd5fbb04e608a8940adab7b8d764ae4706') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |