add r-mdp

2 files changed, 54 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..0d3d8d5a9ab9
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,19 @@
+pkgbase = r-mdp
+	pkgdesc = Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
+	pkgver = 1.16.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/mdp
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-ggplot2
+	depends = r-gridextra
+	optdepends = r-biocmanager
+	optdepends = r-fgsea
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/mdp_1.16.0.tar.gz
+	sha256sums = 516a48889b6822e0919c84bfb7120a51d992e6de56ad6b9dcc6128837f3dfce4
+
+pkgname = r-mdp
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..161d03c8a5bd
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,35 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=mdp
+_pkgver=1.16.0
+pkgname=r-${_pkgname,,}
+pkgver=1.16.0
+pkgrel=1
+pkgdesc='Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-ggplot2
+  r-gridextra
+)
+optdepends=(
+  r-biocmanager
+  r-fgsea
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('516a48889b6822e0919c84bfb7120a51d992e6de56ad6b9dcc6128837f3dfce4')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: