add r-megadepth

2 files changed, 77 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..39acd0ea0784
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,30 @@
+pkgbase = r-megadepth
+	pkgdesc = megadepth: BigWig and BAM related utilities
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/megadepth
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-cmdfun
+	depends = r-dplyr
+	depends = r-fs
+	depends = r-genomicranges
+	depends = r-magrittr
+	depends = r-readr
+	depends = r-xfun
+	optdepends = r-biocstyle
+	optdepends = r-covr
+	optdepends = r-derfinder
+	optdepends = r-genomeinfodb
+	optdepends = r-knitr
+	optdepends = r-refmanager
+	optdepends = r-rmarkdown
+	optdepends = r-rtracklayer
+	optdepends = r-sessioninfo
+	optdepends = r-testthat
+	optdepends = r-tools
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/megadepth_1.6.0.tar.gz
+	sha256sums = c8730a8c35ca272b8e6cdc4858aba313105a0d5b6f8562e11239b7d16a130863
+
+pkgname = r-megadepth
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e96f606584ee
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,47 @@
+# system requirements: megadepth(<https://github.com/ChristopherWilks/megadepth>)
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=megadepth
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='megadepth: BigWig and BAM related utilities'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-cmdfun
+  r-dplyr
+  r-fs
+  r-genomicranges
+  r-magrittr
+  r-readr
+  r-xfun
+)
+optdepends=(
+  r-biocstyle
+  r-covr
+  r-derfinder
+  r-genomeinfodb
+  r-knitr
+  r-refmanager
+  r-rmarkdown
+  r-rtracklayer
+  r-sessioninfo
+  r-testthat
+  r-tools
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('c8730a8c35ca272b8e6cdc4858aba313105a0d5b6f8562e11239b7d16a130863')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: